Mammogram
Introduction
In this section we will:
* identify which Mammogram procedures were excluded and why
* identify which different Mammogram subgroups were created and why
If you have questions or concerns about this data please contact Alexander Nielson (alexnielson@utah.gov)
Load Libraries
Load Libraries
library(data.table)
library(tidyverse)## Warning: replacing previous import 'vctrs::data_frame' by 'tibble::data_frame'
## when loading 'dplyr'library(stringi)
library(ggridges)
library(broom)
library(disk.frame)
library(RecordLinkage)
library(googlesheets4)
library(bigrquery)
library(DBI)
devtools::install_github("utah-osa/hcctools2", upgrade="never" )
library(hcctools2)Establish color palettes
cust_color_pal1 <- c(
"Anesthesia" = "#f3476f",
"Facility" = "#e86a33",
"Medicine Proc" = "#e0a426",
"Pathology" = "#77bf45",
"Radiology" = "#617ff7",
"Surgery" = "#a974ee"
)
cust_color_pal2 <- c(
"TRUE" = "#617ff7",
"FALSE" = "#e0a426"
)
cust_color_pal3 <- c(
"above avg" = "#f3476f",
"avg" = "#77bf45",
"below avg" = "#a974ee"
)
fac_ref_regex <- "(UTAH)|(IHC)|(HOSP)|(HOSPITAL)|(CLINIC)|(ANESTH)|(SCOPY)|(SURG)|(LLC)|(ASSOC)|(MEDIC)|(CENTER)|(ASSOCIATES)|(U OF U)|(HEALTH)|(OLOGY)|(OSCOPY)|(FAMILY)|(VAMC)|(SLC)|(SALT LAKE)|(CITY)|(PROVO)|(OGDEN)|(ENDO )|( VALLEY)|( REGIONAL)|( CTR)|(GRANITE)|( INSTITUTE)|(INSTACARE)|(WASATCH)|(COUNTY)|(PEDIATRIC)|(CORP)|(CENTRAL)|(URGENT)|(CARE)|(UNIV)|(ODYSSEY)|(MOUNTAINSTAR)|( ORTHOPEDIC)|(INSTITUT)|(PARTNERSHIP)|(PHYSICIAN)|(CASTLEVIEW)|(CONSULTING)|(MAGEMENT)|(PRACTICE)|(EMERGENCY)|(SPECIALISTS)|(DIVISION)|(GUT WHISPERER)|(INTERMOUNTAIN)|(OBGYN)"Connect to GCP database
bigrquery::bq_auth(path = 'D:/gcp_keys/healthcare-compare-prod-95b3b7349c32.json')
# set my project ID and dataset name
project_id <- 'healthcare-compare-prod'
dataset_name <- 'healthcare_compare'
con <- dbConnect(
bigrquery::bigquery(),
project = project_id,
dataset = dataset_name,
billing = project_id
)Get NPI table
query <- paste0("SELECT npi, clean_name, osa_group, osa_class, osa_specialization
FROM `healthcare-compare-prod.healthcare_compare.npi_full`")
#bq_project_query(billing, query) # uncomment to determine billing price for above query.
npi_full <- dbGetQuery(con, query) %>%
data.table() get a subset of the NPI providers based upon taxonomy groups
npi_prov_pair <- npi_full%>%
.[,.(npi=npi,
clean_name = clean_name
)
] Load Data
bun_proc <- disk.frame("full_apcd.df")mammo <- bun_proc[proc_code_str_sorted %>% stri_detect_regex("77067") & cnt > 1 &
surg_bun_sum_med==0 &
anes_bun_sum_med==0 &
path_bun_sum_med==0 &
tp_med < 1000 & tp_med > 10
]mammo %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 230 x 2
## name correlation
## <chr> <dbl>
## 1 faci_bun_t_visit 0.263
## 2 radi_bun_t_breast 0.253
## 3 radi_bun_t_exam 0.232
## 4 faci_bun_t_pat 0.212
## 5 faci_bun_t_office 0.212
## 6 faci_bun_t_est 0.211
## 7 radi_bun_t_pelvi 0.189
## 8 radi_bun_t_bone 0.185
## 9 radi_bun_t_x-ray 0.125
## 10 radi_bun_t_without_dye 0.112
## # ... with 220 more rowscols_to_check <- mammo %>% select_if(is.logical)
tag_frequency <- apply(cols_to_check, 2, function(i) sum(i > 0)) %>% enframe() %>% as.data.table() %>% .[,.(tag=name, freq=value)]
outlier_tag_list <- tag_frequency[freq < 100] %>% .[["tag"]]mammo_clean <- remove_bun_proc_with_rare_tags(outlier_tag_list=outlier_tag_list, df=mammo)## [1] "Start of rare tag removal"
## [1] "nrow:21682 , ncol:1404"
## [1] "nrow:21682"
## [1] "removing: surg_bun_t_a-grft"
## [1] 21682
## [1] "removing: surg_bun_t_abd"
## [1] 21682
## [1] "removing: surg_bun_t_abdom"
## [1] 21682
## [1] "removing: surg_bun_t_abdomen"
## [1] 21682
## [1] "removing: surg_bun_t_ablate"
## [1] 21682
## [1] "removing: surg_bun_t_abortion"
## [1] 21682
## [1] "removing: surg_bun_t_abscess"
## [1] 21682
## [1] "removing: surg_bun_t_acell"
## [1] 21682
## [1] "removing: surg_bun_t_acellular"
## [1] 21682
## [1] "removing: surg_bun_t_acne"
## [1] 21682
## [1] "removing: surg_bun_t_acute"
## [1] 21682
## [1] "removing: surg_bun_t_add-on"
## [1] 21682
## [1] "removing: surg_bun_t_adenoid"
## [1] 21682
## [1] "removing: surg_bun_t_adjust"
## [1] 21682
## [1] "removing: surg_bun_t_airway"
## [1] 21682
## [1] "removing: surg_bun_t_amput"
## [1] 21682
## [1] "removing: surg_bun_t_anal"
## [1] 21682
## [1] "removing: surg_bun_t_analysis"
## [1] 21682
## [1] "removing: surg_bun_t_aneurysm"
## [1] 21682
## [1] "removing: surg_bun_t_ankle"
## [1] 21682
## [1] "removing: surg_bun_t_anoscopy"
## [1] 21682
## [1] "removing: surg_bun_t_ant"
## [1] 21682
## [1] "removing: surg_bun_t_antepartum"
## [1] 21682
## [1] "removing: surg_bun_t_aorta"
## [1] 21682
## [1] "removing: surg_bun_t_aortic"
## [1] 21682
## [1] "removing: surg_bun_t_aply"
## [1] 21682
## [1] "removing: surg_bun_t_appendectomy"
## [1] 21682
## [1] "removing: surg_bun_t_application"
## [1] 21682
## [1] "removing: surg_bun_t_apply"
## [1] 21682
## [1] "removing: surg_bun_t_approach"
## [1] 21682
## [1] "removing: surg_bun_t_arm"
## [1] 21682
## [1] "removing: surg_bun_t_art"
## [1] 21682
## [1] "removing: surg_bun_t_arterial"
## [1] 21682
## [1] "removing: surg_bun_t_artery"
## [1] 21682
## [1] "removing: surg_bun_t_arthro"
## [1] 21682
## [1] "removing: surg_bun_t_arthroplasty"
## [1] 21682
## [1] "removing: surg_bun_t_arthroscopy"
## [1] 21682
## [1] "removing: surg_bun_t_artificial"
## [1] 21682
## [1] "removing: surg_bun_t_augmentation"
## [1] 21682
## [1] "removing: surg_bun_t_autograft"
## [1] 21682
## [1] "removing: surg_bun_t_b9"
## [1] 21682
## [1] "removing: surg_bun_t_back"
## [1] 21682
## [1] "removing: surg_bun_t_balloon"
## [1] 21682
## [1] "removing: surg_bun_t_bed"
## [1] 21682
## [1] "removing: surg_bun_t_biceps"
## [1] 21682
## [1] "removing: surg_bun_t_bile"
## [1] 21682
## [1] "removing: surg_bun_t_bilobectomy"
## [1] 21682
## [1] "removing: surg_bun_t_biopsy"
## [1] 21682
## [1] "removing: surg_bun_t_bladder"
## [1] 21682
## [1] "removing: surg_bun_t_bleeding"
## [1] 21682
## [1] "removing: surg_bun_t_block"
## [1] 21682
## [1] "removing: surg_bun_t_blockage"
## [1] 21682
## [1] "removing: surg_bun_t_blood"
## [1] 21681
## [1] "removing: surg_bun_t_body"
## [1] 21676
## [1] "removing: surg_bun_t_bone"
## [1] 21676
## [1] "removing: surg_bun_t_bowel"
## [1] 21676
## [1] "removing: surg_bun_t_brace"
## [1] 21676
## [1] "removing: surg_bun_t_brain"
## [1] 21676
## [1] "removing: surg_bun_t_breast"
## [1] 21676
## [1] "removing: surg_bun_t_bronchial"
## [1] 21676
## [1] "removing: surg_bun_t_bronchoscopy"
## [1] 21676
## [1] "removing: surg_bun_t_brow"
## [1] 21676
## [1] "removing: surg_bun_t_bulge"
## [1] 21676
## [1] "removing: surg_bun_t_burn"
## [1] 21676
## [1] "removing: surg_bun_t_burr"
## [1] 21676
## [1] "removing: surg_bun_t_bursa"
## [1] 21676
## [1] "removing: surg_bun_t_buttck"
## [1] 21676
## [1] "removing: surg_bun_t_buttock"
## [1] 21676
## [1] "removing: surg_bun_t_byp"
## [1] 21676
## [1] "removing: surg_bun_t_bypass"
## [1] 21676
## [1] "removing: surg_bun_t_cabg"
## [1] 21676
## [1] "removing: surg_bun_t_canal"
## [1] 21676
## [1] "removing: surg_bun_t_cannula"
## [1] 21676
## [1] "removing: surg_bun_t_capillary"
## [1] 21676
## [1] "removing: surg_bun_t_capsule"
## [1] 21676
## [1] "removing: surg_bun_t_care"
## [1] 21676
## [1] "removing: surg_bun_t_carotid"
## [1] 21676
## [1] "removing: surg_bun_t_cartilage"
## [1] 21676
## [1] "removing: surg_bun_t_cast"
## [1] 21676
## [1] "removing: surg_bun_t_cath"
## [1] 21676
## [1] "removing: surg_bun_t_cavity"
## [1] 21676
## [1] "removing: surg_bun_t_cell"
## [1] 21676
## [1] "removing: surg_bun_t_cervix"
## [1] 21676
## [1] "removing: surg_bun_t_cesarean"
## [1] 21676
## [1] "removing: surg_bun_t_chamber"
## [1] 21676
## [1] "removing: surg_bun_t_change"
## [1] 21676
## [1] "removing: surg_bun_t_chemical"
## [1] 21676
## [1] "removing: surg_bun_t_chemodenerv"
## [1] 21676
## [1] "removing: surg_bun_t_chest"
## [1] 21676
## [1] "removing: surg_bun_t_chin"
## [1] 21676
## [1] "removing: surg_bun_t_cholangiogram"
## [1] 21676
## [1] "removing: surg_bun_t_cholangiopancreatograph"
## [1] 21676
## [1] "removing: surg_bun_t_cholecystoenterostomy"
## [1] 21676
## [1] "removing: surg_bun_t_chronic"
## [1] 21676
## [1] "removing: surg_bun_t_circulation"
## [1] 21676
## [1] "removing: surg_bun_t_circumcision"
## [1] 21676
## [1] "removing: surg_bun_t_clamp"
## [1] 21676
## [1] "removing: surg_bun_t_clavicle"
## [1] 21676
## [1] "removing: surg_bun_t_clearance"
## [1] 21676
## [1] "removing: surg_bun_t_cleft"
## [1] 21676
## [1] "removing: surg_bun_t_clitoris"
## [1] 21676
## [1] "removing: surg_bun_t_cloacal"
## [1] 21676
## [1] "removing: surg_bun_t_closed"
## [1] 21676
## [1] "removing: surg_bun_t_closure"
## [1] 21676
## [1] "removing: surg_bun_t_clot"
## [1] 21676
## [1] "removing: surg_bun_t_collar"
## [1] 21676
## [1] "removing: surg_bun_t_colon"
## [1] 21676
## [1] "removing: surg_bun_t_colonoscopy"
## [1] 21676
## [1] "removing: surg_bun_t_coloproctostomy"
## [1] 21676
## [1] "removing: surg_bun_t_colostomy"
## [1] 21676
## [1] "removing: surg_bun_t_complex"
## [1] 21676
## [1] "removing: surg_bun_t_compression"
## [1] 21676
## [1] "removing: surg_bun_t_contriction"
## [1] 21676
## [1] "removing: surg_bun_t_control"
## [1] 21676
## [1] "removing: surg_bun_t_cord"
## [1] 21676
## [1] "removing: surg_bun_t_cornea"
## [1] 21676
## [1] "removing: surg_bun_t_coronary"
## [1] 21676
## [1] "removing: surg_bun_t_coronoid"
## [1] 21676
## [1] "removing: surg_bun_t_correct"
## [1] 21676
## [1] "removing: surg_bun_t_cranial"
## [1] 21676
## [1] "removing: surg_bun_t_craniofacial"
## [1] 21676
## [1] "removing: surg_bun_t_cryotherapy"
## [1] 21676
## [1] "removing: surg_bun_t_cuff"
## [1] 21676
## [1] "removing: surg_bun_t_cult"
## [1] 21676
## [1] "removing: surg_bun_t_cyst"
## [1] 21676
## [1] "removing: surg_bun_t_cysto"
## [1] 21676
## [1] "removing: surg_bun_t_cystometrogram"
## [1] 21676
## [1] "removing: surg_bun_t_cystoscopy"
## [1] 21676
## [1] "removing: surg_bun_t_cystouretero"
## [1] 21676
## [1] "removing: surg_bun_t_debrid"
## [1] 21676
## [1] "removing: surg_bun_t_debride"
## [1] 21676
## [1] "removing: surg_bun_t_decompression"
## [1] 21676
## [1] "removing: surg_bun_t_deep"
## [1] 21676
## [1] "removing: surg_bun_t_defect"
## [1] 21676
## [1] "removing: surg_bun_t_defib"
## [1] 21676
## [1] "removing: surg_bun_t_deformity"
## [1] 21676
## [1] "removing: surg_bun_t_degenerated"
## [1] 21676
## [1] "removing: surg_bun_t_delivery"
## [1] 21676
## [1] "removing: surg_bun_t_deplet"
## [1] 21676
## [1] "removing: surg_bun_t_dermabrasion"
## [1] 21676
## [1] "removing: surg_bun_t_design"
## [1] 21676
## [1] "removing: surg_bun_t_destroy"
## [1] 21676
## [1] "removing: surg_bun_t_destruction"
## [1] 21676
## [1] "removing: surg_bun_t_dev"
## [1] 21676
## [1] "removing: surg_bun_t_device"
## [1] 21676
## [1] "removing: surg_bun_t_diagnostic"
## [1] 21676
## [1] "removing: surg_bun_t_dialysis"
## [1] 21676
## [1] "removing: surg_bun_t_diaphragm"
## [1] 21676
## [1] "removing: surg_bun_t_digit"
## [1] 21676
## [1] "removing: surg_bun_t_dilat"
## [1] 21676
## [1] "removing: surg_bun_t_dilation"
## [1] 21676
## [1] "removing: surg_bun_t_disc"
## [1] 21676
## [1] "removing: surg_bun_t_diskectomy"
## [1] 21676
## [1] "removing: surg_bun_t_dislocat"
## [1] 21676
## [1] "removing: surg_bun_t_dissect"
## [1] 21676
## [1] "removing: surg_bun_t_donar"
## [1] 21676
## [1] "removing: surg_bun_t_donor"
## [1] 21676
## [1] "removing: surg_bun_t_drain"
## [1] 21676
## [1] "removing: surg_bun_t_draw"
## [1] 21676
## [1] "removing: surg_bun_t_dressing"
## [1] 21676
## [1] "removing: surg_bun_t_drill"
## [1] 21676
## [1] "removing: surg_bun_t_drug"
## [1] 21676
## [1] "removing: surg_bun_t_duct"
## [1] 21676
## [1] "removing: surg_bun_t_duoden"
## [1] 21676
## [1] "removing: surg_bun_t_dura"
## [1] 21676
## [1] "removing: surg_bun_t_ear"
## [1] 21675
## [1] "removing: surg_bun_t_eardrum"
## [1] 21675
## [1] "removing: surg_bun_t_ectopic"
## [1] 21675
## [1] "removing: surg_bun_t_egd"
## [1] 21675
## [1] "removing: surg_bun_t_elbow"
## [1] 21675
## [1] "removing: surg_bun_t_electrical"
## [1] 21675
## [1] "removing: surg_bun_t_electrode"
## [1] 21675
## [1] "removing: surg_bun_t_electroejaculation"
## [1] 21675
## [1] "removing: surg_bun_t_electrolysis"
## [1] 21675
## [1] "removing: surg_bun_t_embolize"
## [1] 21675
## [1] "removing: surg_bun_t_embryo"
## [1] 21675
## [1] "removing: surg_bun_t_endo"
## [1] 21675
## [1] "removing: surg_bun_t_endoscopy"
## [1] 21675
## [1] "removing: surg_bun_t_endovas"
## [1] 21675
## [1] "removing: surg_bun_t_enlarge"
## [1] 21675
## [1] "removing: surg_bun_t_enterectomy"
## [1] 21675
## [1] "removing: surg_bun_t_epiderm"
## [1] 21675
## [1] "removing: surg_bun_t_epididymis"
## [1] 21675
## [1] "removing: surg_bun_t_epiphysis"
## [1] 21675
## [1] "removing: surg_bun_t_episiotomy"
## [1] 21675
## [1] "removing: surg_bun_t_esoph"
## [1] 21675
## [1] "removing: surg_bun_t_esophagoscopy"
## [1] 21675
## [1] "removing: surg_bun_t_esophagus"
## [1] 21675
## [1] "removing: surg_bun_t_exam"
## [1] 21673
## [1] "removing: surg_bun_t_exc"
## [1] 21673
## [1] "removing: surg_bun_t_excessive"
## [1] 21673
## [1] "removing: surg_bun_t_excise"
## [1] 21673
## [1] "removing: surg_bun_t_excision"
## [1] 21673
## [1] "removing: surg_bun_t_exostosis"
## [1] 21673
## [1] "removing: surg_bun_t_expander"
## [1] 21673
## [1] "removing: surg_bun_t_explora"
## [1] 21673
## [1] "removing: surg_bun_t_explore"
## [1] 21673
## [1] "removing: surg_bun_t_extra"
## [1] 21673
## [1] "removing: surg_bun_t_extremity"
## [1] 21673
## [1] "removing: surg_bun_t_eye"
## [1] 21673
## [1] "removing: surg_bun_t_eyelashes"
## [1] 21673
## [1] "removing: surg_bun_t_eyelid"
## [1] 21673
## [1] "removing: surg_bun_t_face"
## [1] 21673
## [1] "removing: surg_bun_t_fallopian"
## [1] 21673
## [1] "removing: surg_bun_t_fascia"
## [1] 21673
## [1] "removing: surg_bun_t_fat"
## [1] 21673
## [1] "removing: surg_bun_t_femur"
## [1] 21673
## [1] "removing: surg_bun_t_fibula"
## [1] 21673
## [1] "removing: surg_bun_t_finger"
## [1] 21673
## [1] "removing: surg_bun_t_fissure"
## [1] 21673
## [1] "removing: surg_bun_t_fistula"
## [1] 21673
## [1] "removing: surg_bun_t_fixation"
## [1] 21673
## [1] "removing: surg_bun_t_flap"
## [1] 21673
## [1] "removing: surg_bun_t_flow"
## [1] 21673
## [1] "removing: surg_bun_t_fluid"
## [1] 21673
## [1] "removing: surg_bun_t_fna"
## [1] 21673
## [1] "removing: surg_bun_t_follow-up"
## [1] 21673
## [1] "removing: surg_bun_t_foot"
## [1] 21673
## [1] "removing: surg_bun_t_forearm"
## [1] 21673
## [1] "removing: surg_bun_t_forehead"
## [1] 21673
## [1] "removing: surg_bun_t_foreign"
## [1] 21673
## [1] "removing: surg_bun_t_fracture"
## [1] 21673
## [1] "removing: surg_bun_t_free"
## [1] 21673
## [1] "removing: surg_bun_t_frontal"
## [1] 21673
## [1] "removing: surg_bun_t_fundoplasty"
## [1] 21673
## [1] "removing: surg_bun_t_fusion"
## [1] 21673
## [1] "removing: surg_bun_t_gallbladder"
## [1] 21673
## [1] "removing: surg_bun_t_gastrointestinal"
## [1] 21673
## [1] "removing: surg_bun_t_gastrostomy"
## [1] 21673
## [1] "removing: surg_bun_t_gentialia"
## [1] 21673
## [1] "removing: surg_bun_t_gi"
## [1] 21673
## [1] "removing: surg_bun_t_gland"
## [1] 21673
## [1] "removing: surg_bun_t_glaucoma"
## [1] 21673
## [1] "removing: surg_bun_t_graft"
## [1] 21673
## [1] "removing: surg_bun_t_growth"
## [1] 21673
## [1] "removing: surg_bun_t_gum"
## [1] 21673
## [1] "removing: surg_bun_t_hair"
## [1] 21673
## [1] "removing: surg_bun_t_hallux"
## [1] 21673
## [1] "removing: surg_bun_t_halo"
## [1] 21673
## [1] "removing: surg_bun_t_hand"
## [1] 21673
## [1] "removing: surg_bun_t_harvest"
## [1] 21673
## [1] "removing: surg_bun_t_head"
## [1] 21673
## [1] "removing: surg_bun_t_heart"
## [1] 21673
## [1] "removing: surg_bun_t_hematoma"
## [1] 21673
## [1] "removing: surg_bun_t_hemorrhoid"
## [1] 21673
## [1] "removing: surg_bun_t_hemorrhoidopexy"
## [1] 21673
## [1] "removing: surg_bun_t_hernia"
## [1] 21673
## [1] "removing: surg_bun_t_hip"
## [1] 21673
## [1] "removing: surg_bun_t_hole"
## [1] 21673
## [1] "removing: surg_bun_t_hormone"
## [1] 21673
## [1] "removing: surg_bun_t_humer"
## [1] 21673
## [1] "removing: surg_bun_t_hydrocele"
## [1] 21673
## [1] "removing: surg_bun_t_hyst"
## [1] 21673
## [1] "removing: surg_bun_t_hysterectomy"
## [1] 21673
## [1] "removing: surg_bun_t_iliopsoas"
## [1] 21673
## [1] "removing: surg_bun_t_illiac"
## [1] 21673
## [1] "removing: surg_bun_t_imag"
## [1] 21673
## [1] "removing: surg_bun_t_implant"
## [1] 21673
## [1] "removing: surg_bun_t_incision"
## [1] 21673
## [1] "removing: surg_bun_t_infect"
## [1] 21673
## [1] "removing: surg_bun_t_injection"
## [1] 21673
## [1] "removing: surg_bun_t_inner"
## [1] 21673
## [1] "removing: surg_bun_t_insert"
## [1] 21673
## [1] "removing: surg_bun_t_interlaminar"
## [1] 21673
## [1] "removing: surg_bun_t_internal"
## [1] 21673
## [1] "removing: surg_bun_t_intestine"
## [1] 21673
## [1] "removing: surg_bun_t_intracorporeal"
## [1] 21673
## [1] "removing: surg_bun_t_intracranial"
## [1] 21673
## [1] "removing: surg_bun_t_intranasal"
## [1] 21673
## [1] "removing: surg_bun_t_inverted"
## [1] 21673
## [1] "removing: surg_bun_t_iris"
## [1] 21673
## [1] "removing: surg_bun_t_jaw"
## [1] 21673
## [1] "removing: surg_bun_t_joint"
## [1] 21673
## [1] "removing: surg_bun_t_kidney"
## [1] 21673
## [1] "removing: surg_bun_t_knee"
## [1] 21673
## [1] "removing: surg_bun_t_kneecap"
## [1] 21673
## [1] "removing: surg_bun_t_knuckle"
## [1] 21673
## [1] "removing: surg_bun_t_kyphectomy"
## [1] 21673
## [1] "removing: surg_bun_t_laceration"
## [1] 21673
## [1] "removing: surg_bun_t_lamina"
## [1] 21673
## [1] "removing: surg_bun_t_laminotomy"
## [1] 21673
## [1] "removing: surg_bun_t_lap"
## [1] 21673
## [1] "removing: surg_bun_t_laparoscop"
## [1] 21673
## [1] "removing: surg_bun_t_large"
## [1] 21673
## [1] "removing: surg_bun_t_laryngoscopy"
## [1] 21673
## [1] "removing: surg_bun_t_larynx"
## [1] 21673
## [1] "removing: surg_bun_t_laser"
## [1] 21673
## [1] "removing: surg_bun_t_lavage"
## [1] 21673
## [1] "removing: surg_bun_t_lefort"
## [1] 21673
## [1] "removing: surg_bun_t_leg"
## [1] 21673
## [1] "removing: surg_bun_t_lengthen"
## [1] 21673
## [1] "removing: surg_bun_t_lesion"
## [1] 21673
## [1] "removing: surg_bun_t_ligament"
## [1] 21673
## [1] "removing: surg_bun_t_ligation"
## [1] 21673
## [1] "removing: surg_bun_t_lining"
## [1] 21673
## [1] "removing: surg_bun_t_lip"
## [1] 21673
## [1] "removing: surg_bun_t_lipectomy"
## [1] 21673
## [1] "removing: surg_bun_t_liver"
## [1] 21673
## [1] "removing: surg_bun_t_lobectomy"
## [1] 21673
## [1] "removing: surg_bun_t_long"
## [1] 21673
## [1] "removing: surg_bun_t_lower"
## [1] 21673
## [1] "removing: surg_bun_t_lumbar"
## [1] 21673
## [1] "removing: surg_bun_t_lung"
## [1] 21673
## [1] "removing: surg_bun_t_lymph"
## [1] 21673
## [1] "removing: surg_bun_t_major"
## [1] 21673
## [1] "removing: surg_bun_t_mandible"
## [1] 21673
## [1] "removing: surg_bun_t_marrow"
## [1] 21673
## [1] "removing: surg_bun_t_mast"
## [1] 21673
## [1] "removing: surg_bun_t_mastectomy"
## [1] 21673
## [1] "removing: surg_bun_t_mastoid"
## [1] 21673
## [1] "removing: surg_bun_t_material"
## [1] 21673
## [1] "removing: surg_bun_t_maxilla"
## [1] 21673
## [1] "removing: surg_bun_t_mcp"
## [1] 21673
## [1] "removing: surg_bun_t_mesh"
## [1] 21673
## [1] "removing: surg_bun_t_metacarpal"
## [1] 21673
## [1] "removing: surg_bun_t_microvasc"
## [1] 21673
## [1] "removing: surg_bun_t_middle"
## [1] 21673
## [1] "removing: surg_bun_t_midfoot"
## [1] 21673
## [1] "removing: surg_bun_t_mitral"
## [1] 21673
## [1] "removing: surg_bun_t_mohs"
## [1] 21673
## [1] "removing: surg_bun_t_mouth"
## [1] 21673
## [1] "removing: surg_bun_t_musc"
## [1] 21673
## [1] "removing: surg_bun_t_myelography"
## [1] 21673
## [1] "removing: surg_bun_t_myomectomy"
## [1] 21673
## [1] "removing: surg_bun_t_nail"
## [1] 21673
## [1] "removing: surg_bun_t_nasal"
## [1] 21673
## [1] "removing: surg_bun_t_nasolacrimal"
## [1] 21673
## [1] "removing: surg_bun_t_neck"
## [1] 21673
## [1] "removing: surg_bun_t_needle"
## [1] 21673
## [1] "removing: surg_bun_t_nephrectomy"
## [1] 21673
## [1] "removing: surg_bun_t_nerve"
## [1] 21673
## [1] "removing: surg_bun_t_neuroelectrode"
## [1] 21673
## [1] "removing: surg_bun_t_neuroendoscopy"
## [1] 21673
## [1] "removing: surg_bun_t_nipple"
## [1] 21673
## [1] "removing: surg_bun_t_njx"
## [1] 21673
## [1] "removing: surg_bun_t_node"
## [1] 21673
## [1] "removing: surg_bun_t_nodule"
## [1] 21673
## [1] "removing: surg_bun_t_nonfacial"
## [1] 21673
## [1] "removing: surg_bun_t_nose"
## [1] 21673
## [1] "removing: surg_bun_t_nosebleed"
## [1] 21673
## [1] "removing: surg_bun_t_nuero"
## [1] 21673
## [1] "removing: surg_bun_t_obstetrical"
## [1] 21673
## [1] "removing: surg_bun_t_open"
## [1] 21673
## [1] "removing: surg_bun_t_opening"
## [1] 21673
## [1] "removing: surg_bun_t_oral"
## [1] 21673
## [1] "removing: surg_bun_t_orbitocranial"
## [1] 21673
## [1] "removing: surg_bun_t_orchiopexy"
## [1] 21673
## [1] "removing: surg_bun_t_other"
## [1] 21673
## [1] "removing: surg_bun_t_ovarian"
## [1] 21673
## [1] "removing: surg_bun_t_ovary"
## [1] 21673
## [1] "removing: surg_bun_t_pacemaker"
## [1] 21673
## [1] "removing: surg_bun_t_pad"
## [1] 21673
## [1] "removing: surg_bun_t_palate"
## [1] 21673
## [1] "removing: surg_bun_t_palm"
## [1] 21673
## [1] "removing: surg_bun_t_palsy"
## [1] 21673
## [1] "removing: surg_bun_t_pancreas"
## [1] 21673
## [1] "removing: surg_bun_t_pancreatectomy"
## [1] 21673
## [1] "removing: surg_bun_t_paravert"
## [1] 21673
## [1] "removing: surg_bun_t_part"
## [1] 21673
## [1] "removing: surg_bun_t_partial"
## [1] 21673
## [1] "removing: surg_bun_t_pedcle"
## [1] 21673
## [1] "removing: surg_bun_t_pedicle"
## [1] 21673
## [1] "removing: surg_bun_t_peel"
## [1] 21673
## [1] "removing: surg_bun_t_pelvic"
## [1] 21673
## [1] "removing: surg_bun_t_pelvis"
## [1] 21673
## [1] "removing: surg_bun_t_penile"
## [1] 21673
## [1] "removing: surg_bun_t_penis"
## [1] 21673
## [1] "removing: surg_bun_t_percut"
## [1] 21673
## [1] "removing: surg_bun_t_percutaneous"
## [1] 21673
## [1] "removing: surg_bun_t_perineum"
## [1] 21673
## [1] "removing: surg_bun_t_pernineum"
## [1] 21673
## [1] "removing: surg_bun_t_pharynx"
## [1] 21673
## [1] "removing: surg_bun_t_pierce"
## [1] 21673
## [1] "removing: surg_bun_t_pilonidal"
## [1] 21673
## [1] "removing: surg_bun_t_place"
## [1] 21673
## [1] "removing: surg_bun_t_plastic"
## [1] 21673
## [1] "removing: surg_bun_t_plate"
## [1] 21673
## [1] "removing: surg_bun_t_pneumonectomy"
## [1] 21673
## [1] "removing: surg_bun_t_polyp"
## [1] 21673
## [1] "removing: surg_bun_t_pouch"
## [1] 21673
## [1] "removing: surg_bun_t_pregnancy"
## [1] 21673
## [1] "removing: surg_bun_t_prep"
## [1] 21673
## [1] "removing: surg_bun_t_prepare"
## [1] 21673
## [1] "removing: surg_bun_t_pressure"
## [1] 21673
## [1] "removing: surg_bun_t_process"
## [1] 21673
## [1] "removing: surg_bun_t_proctosigmoidoscopy"
## [1] 21673
## [1] "removing: surg_bun_t_prolapse"
## [1] 21673
## [1] "removing: surg_bun_t_prostat"
## [1] 21673
## [1] "removing: surg_bun_t_prostate"
## [1] 21673
## [1] "removing: surg_bun_t_prosthesis"
## [1] 21673
## [1] "removing: surg_bun_t_prosthetic"
## [1] 21673
## [1] "removing: surg_bun_t_pulmonary"
## [1] 21673
## [1] "removing: surg_bun_t_punch"
## [1] 21673
## [1] "removing: surg_bun_t_puncture"
## [1] 21673
## [1] "removing: surg_bun_t_pyeloplasty"
## [1] 21673
## [1] "removing: surg_bun_t_radius"
## [1] 21673
## [1] "removing: surg_bun_t_realignment"
## [1] 21673
## [1] "removing: surg_bun_t_rechannel"
## [1] 21673
## [1] "removing: surg_bun_t_reconstruct"
## [1] 21673
## [1] "removing: surg_bun_t_reconstruction"
## [1] 21673
## [1] "removing: surg_bun_t_rectal"
## [1] 21673
## [1] "removing: surg_bun_t_rectum"
## [1] 21673
## [1] "removing: surg_bun_t_reduction"
## [1] 21673
## [1] "removing: surg_bun_t_reinforce"
## [1] 21673
## [1] "removing: surg_bun_t_release"
## [1] 21673
## [1] "removing: surg_bun_t_remov"
## [1] 21672
## [1] "removing: surg_bun_t_removal"
## [1] 21672
## [1] "removing: surg_bun_t_remove"
## [1] 21672
## [1] "removing: surg_bun_t_renal"
## [1] 21672
## [1] "removing: surg_bun_t_repair"
## [1] 21672
## [1] "removing: surg_bun_t_replantation"
## [1] 21672
## [1] "removing: surg_bun_t_resect"
## [1] 21672
## [1] "removing: surg_bun_t_reset"
## [1] 21672
## [1] "removing: surg_bun_t_retina"
## [1] 21672
## [1] "removing: surg_bun_t_retinopathy"
## [1] 21672
## [1] "removing: surg_bun_t_revise"
## [1] 21672
## [1] "removing: surg_bun_t_revision"
## [1] 21672
## [1] "removing: surg_bun_t_rib"
## [1] 21672
## [1] "removing: surg_bun_t_ridge"
## [1] 21672
## [1] "removing: surg_bun_t_ring"
## [1] 21672
## [1] "removing: surg_bun_t_roof"
## [1] 21672
## [1] "removing: surg_bun_t_rotator"
## [1] 21672
## [1] "removing: surg_bun_t_routine"
## [1] 21672
## [1] "removing: surg_bun_t_sacrum"
## [1] 21672
## [1] "removing: surg_bun_t_salivary"
## [1] 21672
## [1] "removing: surg_bun_t_scapula"
## [1] 21672
## [1] "removing: surg_bun_t_scar"
## [1] 21672
## [1] "removing: surg_bun_t_scope"
## [1] 21672
## [1] "removing: surg_bun_t_scrotum"
## [1] 21672
## [1] "removing: surg_bun_t_segment"
## [1] 21672
## [1] "removing: surg_bun_t_segmental"
## [1] 21672
## [1] "removing: surg_bun_t_segmentectomy"
## [1] 21672
## [1] "removing: surg_bun_t_septum"
## [1] 21672
## [1] "removing: surg_bun_t_sex"
## [1] 21672
## [1] "removing: surg_bun_t_shave"
## [1] 21672
## [1] "removing: surg_bun_t_sheath"
## [1] 21672
## [1] "removing: surg_bun_t_shorten"
## [1] 21672
## [1] "removing: surg_bun_t_shoulder"
## [1] 21672
## [1] "removing: surg_bun_t_shunt"
## [1] 21672
## [1] "removing: surg_bun_t_sigmoidoscopy"
## [1] 21672
## [1] "removing: surg_bun_t_simple"
## [1] 21672
## [1] "removing: surg_bun_t_sinus"
## [1] 21672
## [1] "removing: surg_bun_t_skeletal"
## [1] 21672
## [1] "removing: surg_bun_t_skin"
## [1] 21672
## [1] "removing: surg_bun_t_skull"
## [1] 21672
## [1] "removing: surg_bun_t_sleeve"
## [1] 21672
## [1] "removing: surg_bun_t_slipped"
## [1] 21672
## [1] "removing: surg_bun_t_small"
## [1] 21672
## [1] "removing: surg_bun_t_socket"
## [1] 21672
## [1] "removing: surg_bun_t_soft"
## [1] 21672
## [1] "removing: surg_bun_t_sore"
## [1] 21672
## [1] "removing: surg_bun_t_sperm"
## [1] 21672
## [1] "removing: surg_bun_t_sphenoid"
## [1] 21672
## [1] "removing: surg_bun_t_sphincter"
## [1] 21672
## [1] "removing: surg_bun_t_spine"
## [1] 21672
## [1] "removing: surg_bun_t_spleen"
## [1] 21672
## [1] "removing: surg_bun_t_splint"
## [1] 21672
## [1] "removing: surg_bun_t_split"
## [1] 21672
## [1] "removing: surg_bun_t_stem"
## [1] 21672
## [1] "removing: surg_bun_t_stenosis"
## [1] 21672
## [1] "removing: surg_bun_t_stent"
## [1] 21672
## [1] "removing: surg_bun_t_sternal"
## [1] 21672
## [1] "removing: surg_bun_t_sternum"
## [1] 21672
## [1] "removing: surg_bun_t_stimulation"
## [1] 21672
## [1] "removing: surg_bun_t_stomach"
## [1] 21672
## [1] "removing: surg_bun_t_stone"
## [1] 21672
## [1] "removing: surg_bun_t_stop"
## [1] 21672
## [1] "removing: surg_bun_t_strapping"
## [1] 21672
## [1] "removing: surg_bun_t_stricture"
## [1] 21672
## [1] "removing: surg_bun_t_styloid"
## [1] 21672
## [1] "removing: surg_bun_t_sub"
## [1] 21672
## [1] "removing: surg_bun_t_suction"
## [1] 21672
## [1] "removing: surg_bun_t_superficial"
## [1] 21672
## [1] "removing: surg_bun_t_suspension"
## [1] 21672
## [1] "removing: surg_bun_t_sutures"
## [1] 21672
## [1] "removing: surg_bun_t_sweat"
## [1] 21672
## [1] "removing: surg_bun_t_tags"
## [1] 21672
## [1] "removing: surg_bun_t_tail"
## [1] 21672
## [1] "removing: surg_bun_t_tear"
## [1] 21672
## [1] "removing: surg_bun_t_temporal"
## [1] 21672
## [1] "removing: surg_bun_t_tendon"
## [1] 21672
## [1] "removing: surg_bun_t_testis"
## [1] 21672
## [1] "removing: surg_bun_t_therapy"
## [1] 21672
## [1] "removing: surg_bun_t_thigh"
## [1] 21672
## [1] "removing: surg_bun_t_thoracoscopy"
## [1] 21672
## [1] "removing: surg_bun_t_thoracotomy"
## [1] 21672
## [1] "removing: surg_bun_t_thorax"
## [1] 21672
## [1] "removing: surg_bun_t_throat"
## [1] 21672
## [1] "removing: surg_bun_t_thrombin"
## [1] 21672
## [1] "removing: surg_bun_t_thrombo"
## [1] 21672
## [1] "removing: surg_bun_t_thumb"
## [1] 21672
## [1] "removing: surg_bun_t_thymus"
## [1] 21672
## [1] "removing: surg_bun_t_thyroid"
## [1] 21672
## [1] "removing: surg_bun_t_tip"
## [1] 21672
## [1] "removing: surg_bun_t_tiss"
## [1] 21672
## [1] "removing: surg_bun_t_tkr"
## [1] 21672
## [1] "removing: surg_bun_t_toe"
## [1] 21672
## [1] "removing: surg_bun_t_tongue"
## [1] 21672
## [1] "removing: surg_bun_t_tonsil"
## [1] 21672
## [1] "removing: surg_bun_t_torsion"
## [1] 21672
## [1] "removing: surg_bun_t_total"
## [1] 21672
## [1] "removing: surg_bun_t_tract"
## [1] 21672
## [1] "removing: surg_bun_t_transcath"
## [1] 21672
## [1] "removing: surg_bun_t_transfer"
## [1] 21672
## [1] "removing: surg_bun_t_transform"
## [1] 21672
## [1] "removing: surg_bun_t_transplant"
## [1] 21672
## [1] "removing: surg_bun_t_treat"
## [1] 21672
## [1] "removing: surg_bun_t_triceps"
## [1] 21672
## [1] "removing: surg_bun_t_tricuspid"
## [1] 21672
## [1] "removing: surg_bun_t_trigger"
## [1] 21672
## [1] "removing: surg_bun_t_trim"
## [1] 21672
## [1] "removing: surg_bun_t_tube"
## [1] 21672
## [1] "removing: surg_bun_t_tum"
## [1] 21672
## [1] "removing: surg_bun_t_tumor"
## [1] 21672
## [1] "removing: surg_bun_t_tunneled"
## [1] 21672
## [1] "removing: surg_bun_t_ulcer"
## [1] 21672
## [1] "removing: surg_bun_t_ulna"
## [1] 21672
## [1] "removing: surg_bun_t_umbil"
## [1] 21672
## [1] "removing: surg_bun_t_unit"
## [1] 21672
## [1] "removing: surg_bun_t_unstable"
## [1] 21672
## [1] "removing: surg_bun_t_upper"
## [1] 21672
## [1] "removing: surg_bun_t_ureter"
## [1] 21672
## [1] "removing: surg_bun_t_urethra"
## [1] 21672
## [1] "removing: surg_bun_t_urethrovaginal"
## [1] 21672
## [1] "removing: surg_bun_t_uterus"
## [1] 21672
## [1] "removing: surg_bun_t_uvula"
## [1] 21672
## [1] "removing: surg_bun_t_vag"
## [1] 21672
## [1] "removing: surg_bun_t_vagotomy"
## [1] 21672
## [1] "removing: surg_bun_t_valgus"
## [1] 21672
## [1] "removing: surg_bun_t_valve"
## [1] 21672
## [1] "removing: surg_bun_t_vascular"
## [1] 21672
## [1] "removing: surg_bun_t_vein"
## [1] 21672
## [1] "removing: surg_bun_t_venipuncture"
## [1] 21672
## [1] "removing: surg_bun_t_ventricular"
## [1] 21672
## [1] "removing: surg_bun_t_vertebra"
## [1] 21672
## [1] "removing: surg_bun_t_vessel"
## [1] 21672
## [1] "removing: surg_bun_t_vulva"
## [1] 21672
## [1] "removing: surg_bun_t_wall"
## [1] 21672
## [1] "removing: surg_bun_t_wax"
## [1] 21672
## [1] "removing: surg_bun_t_web"
## [1] 21672
## [1] "removing: surg_bun_t_wedge"
## [1] 21672
## [1] "removing: surg_bun_t_window"
## [1] 21672
## [1] "removing: surg_bun_t_windpipe"
## [1] 21672
## [1] "removing: surg_bun_t_wound"
## [1] 21672
## [1] "removing: surg_bun_t_wrinkle"
## [1] 21672
## [1] "removing: surg_bun_t_wrist"
## [1] 21672
## [1] "removing: surg_bun_t_x-ray"
## [1] 21672
## [1] "removing: surg_bun_t_xenograft"
## [1] 21672
## [1] "removing: surg_bun_t_xenogrft"
## [1] 21672
## [1] "removing: surg_bun_t_xgraft"
## [1] 21672
## [1] "removing: medi_bun_t_add-on"
## [1] 21668
## [1] "removing: medi_bun_t_analy"
## [1] 21664
## [1] "removing: medi_bun_t_applicat"
## [1] 21664
## [1] "removing: medi_bun_t_apply"
## [1] 21664
## [1] "removing: medi_bun_t_asses"
## [1] 21660
## [1] "removing: medi_bun_t_benzathine"
## [1] 21659
## [1] "removing: medi_bun_t_betamethasone"
## [1] 21659
## [1] "removing: medi_bun_t_boot"
## [1] 21643
## [1] "removing: medi_bun_t_candida"
## [1] 21643
## [1] "removing: medi_bun_t_cast"
## [1] 21643
## [1] "removing: medi_bun_t_cathet"
## [1] 21643
## [1] "removing: medi_bun_t_catheterisation"
## [1] 21643
## [1] "removing: medi_bun_t_choline"
## [1] 21643
## [1] "removing: medi_bun_t_clinic"
## [1] 21620
## [1] "removing: medi_bun_t_clostridium"
## [1] 21620
## [1] "removing: medi_bun_t_cochlear"
## [1] 21620
## [1] "removing: medi_bun_t_cold"
## [1] 21610
## [1] "removing: medi_bun_t_consult"
## [1] 21610
## [1] "removing: medi_bun_t_consultation"
## [1] 21610
## [1] "removing: medi_bun_t_crutch"
## [1] 21610
## [1] "removing: medi_bun_t_cyst"
## [1] 21610
## [1] "removing: medi_bun_t_depression"
## [1] 21591
## [1] "removing: medi_bun_t_derma"
## [1] 21591
## [1] "removing: medi_bun_t_dermal"
## [1] 21591
## [1] "removing: medi_bun_t_device"
## [1] 21568
## [1] "removing: medi_bun_t_dialys"
## [1] 21563
## [1] "removing: medi_bun_t_discharg"
## [1] 21563
## [1] "removing: medi_bun_t_drain"
## [1] 21563
## [1] "removing: medi_bun_t_draw"
## [1] 21563
## [1] "removing: medi_bun_t_dtap"
## [1] 21563
## [1] "removing: medi_bun_t_dtap-ipv"
## [1] 21563
## [1] "removing: medi_bun_t_emotional"
## [1] 21493
## [1] "removing: medi_bun_t_endocrine"
## [1] 21493
## [1] "removing: medi_bun_t_epstein-barr"
## [1] 21493
## [1] "removing: medi_bun_t_equipment"
## [1] 21493
## [1] "removing: medi_bun_t_establish"
## [1] 21430
## [1] "removing: medi_bun_t_estradiol"
## [1] 21425
## [1] "removing: medi_bun_t_evaluat"
## [1] 21378
## [1] "removing: medi_bun_t_flu"
## [1] 21343
## [1] "removing: medi_bun_t_follow-up"
## [1] 21343
## [1] "removing: medi_bun_t_gastroenterology"
## [1] 21343
## [1] "removing: medi_bun_t_gonorrhoeae"
## [1] 21343
## [1] "removing: medi_bun_t_haloperidol"
## [1] 21343
## [1] "removing: medi_bun_t_hearing"
## [1] 21307
## [1] "removing: medi_bun_t_hemorrhoid"
## [1] 21307
## [1] "removing: medi_bun_t_hepatitis"
## [1] 21307
## [1] "removing: medi_bun_t_hiv - 2"
## [1] 21307
## [1] "removing: medi_bun_t_hiv - 3"
## [1] 21307
## [1] "removing: medi_bun_t_home"
## [1] 21307
## [1] "removing: medi_bun_t_hormone"
## [1] 21307
## [1] "removing: medi_bun_t_hpv"
## [1] 21303
## [1] "removing: medi_bun_t_hydrate"
## [1] 21303
## [1] "removing: medi_bun_t_hydration"
## [1] 21303
## [1] "removing: medi_bun_t_immune"
## [1] 21300
## [1] "removing: medi_bun_t_immunoassay"
## [1] 21287
## [1] "removing: medi_bun_t_immunohisto"
## [1] 21287
## [1] "removing: medi_bun_t_influenza"
## [1] 21287
## [1] "removing: medi_bun_t_insulin"
## [1] 21287
## [1] "removing: medi_bun_t_intrauterine"
## [1] 21287
## [1] "removing: medi_bun_t_iodine"
## [1] 21287
## [1] "removing: medi_bun_t_laiv4"
## [1] 21287
## [1] "removing: medi_bun_t_medroxyprogesterone"
## [1] 21278
## [1] "removing: medi_bun_t_mental"
## [1] 21278
## [1] "removing: medi_bun_t_metabolic"
## [1] 21278
## [1] "removing: medi_bun_t_methylprednisolone"
## [1] 21274
## [1] "removing: medi_bun_t_mgmt"
## [1] 21272
## [1] "removing: medi_bun_t_mmr"
## [1] 21249
## [1] "removing: medi_bun_t_monitor"
## [1] 21243
## [1] "removing: medi_bun_t_muscle"
## [1] 21243
## [1] "removing: medi_bun_t_needle"
## [1] 21243
## [1] "removing: medi_bun_t_non-invasive"
## [1] 21243
## [1] "removing: medi_bun_t_non-stress"
## [1] 21243
## [1] "removing: medi_bun_t_normal"
## [1] 21242
## [1] "removing: medi_bun_t_nursing"
## [1] 21242
## [1] "removing: medi_bun_t_nutrition"
## [1] 21209
## [1] "removing: medi_bun_t_observ"
## [1] 21209
## [1] "removing: medi_bun_t_oral"
## [1] 21205
## [1] "removing: medi_bun_t_outpatient"
## [1] 21205
## [1] "removing: medi_bun_t_outpt"
## [1] 21205
## [1] "removing: medi_bun_t_pap"
## [1] 21204
## [1] "removing: medi_bun_t_physical"
## [1] 21202
## [1] "removing: medi_bun_t_portable"
## [1] 21202
## [1] "removing: medi_bun_t_prednisolone"
## [1] 21202
## [1] "removing: medi_bun_t_pressure"
## [1] 21202
## [1] "removing: medi_bun_t_progesterone"
## [1] 21202
## [1] "removing: medi_bun_t_psych"
## [1] 21186
## [1] "removing: medi_bun_t_psychiat"
## [1] 21186
## [1] "removing: medi_bun_t_psycho"
## [1] 21186
## [1] "removing: medi_bun_t_pulmonary"
## [1] 21185
## [1] "removing: medi_bun_t_rabies"
## [1] 21184
## [1] "removing: medi_bun_t_radiation"
## [1] 21184
## [1] "removing: medi_bun_t_radio"
## [1] 21184
## [1] "removing: medi_bun_t_reeval"
## [1] 21184
## [1] "removing: medi_bun_t_rehab"
## [1] 21184
## [1] "removing: medi_bun_t_remove"
## [1] 21184
## [1] "removing: medi_bun_t_rheumatoid"
## [1] 21184
## [1] "removing: medi_bun_t_riv4"
## [1] 21149
## [1] "removing: medi_bun_t_rubella"
## [1] 21149
## [1] "removing: medi_bun_t_saline"
## [1] 21149
## [1] "removing: medi_bun_t_sciatic"
## [1] 21149
## [1] "removing: medi_bun_t_serum"
## [1] 21149
## [1] "removing: medi_bun_t_services"
## [1] 21134
## [1] "removing: medi_bun_t_shave"
## [1] 21134
## [1] "removing: medi_bun_t_simple"
## [1] 21134
## [1] "removing: medi_bun_t_sleep"
## [1] 21116
## [1] "removing: medi_bun_t_smear"
## [1] 21116
## [1] "removing: medi_bun_t_sodium"
## [1] 21104
## [1] "removing: medi_bun_t_soft"
## [1] 21103
## [1] "removing: medi_bun_t_solution"
## [1] 21103
## [1] "removing: medi_bun_t_sound"
## [1] 21045
## [1] "removing: medi_bun_t_speech"
## [1] 21043
## [1] "removing: medi_bun_t_splint"
## [1] 21043
## [1] "removing: medi_bun_t_splt"
## [1] 20972
## [1] "removing: medi_bun_t_stent"
## [1] 20972
## [1] "removing: medi_bun_t_sterile"
## [1] 20972
## [1] "removing: medi_bun_t_stocking"
## [1] 20972
## [1] "removing: medi_bun_t_stone"
## [1] 20972
## [1] "removing: medi_bun_t_stool"
## [1] 20972
## [1] "removing: medi_bun_t_strep"
## [1] 20972
## [1] "removing: medi_bun_t_stress"
## [1] 20963
## [1] "removing: medi_bun_t_stud"
## [1] 20889
## [1] "removing: medi_bun_t_subseq"
## [1] 20882
## [1] "removing: medi_bun_t_substitute"
## [1] 20882
## [1] "removing: medi_bun_t_sulfate"
## [1] 20882
## [1] "removing: medi_bun_t_supplies"
## [1] 20882
## [1] "removing: medi_bun_t_suppls"
## [1] 20882
## [1] "removing: medi_bun_t_support"
## [1] 20882
## [1] "removing: medi_bun_t_susceptible"
## [1] 20882
## [1] "removing: medi_bun_t_swallow"
## [1] 20882
## [1] "removing: medi_bun_t_synth"
## [1] 20870
## [1] "removing: medi_bun_t_syphilis"
## [1] 20870
## [1] "removing: medi_bun_t_syringe"
## [1] 20870
## [1] "removing: medi_bun_t_system"
## [1] 20870
## [1] "removing: medi_bun_t_tdap"
## [1] 20825
## [1] "removing: medi_bun_t_testing"
## [1] 20824
## [1] "removing: medi_bun_t_testosterone"
## [1] 20818
## [1] "removing: medi_bun_t_tests"
## [1] 20814
## [1] "removing: medi_bun_t_tetanus"
## [1] 20814
## [1] "removing: medi_bun_t_thyroxine"
## [1] 20814
## [1] "removing: medi_bun_t_tobacco"
## [1] 20814
## [1] "removing: medi_bun_t_toe"
## [1] 20814
## [1] "removing: medi_bun_t_tolerance"
## [1] 20814
## [1] "removing: medi_bun_t_topical"
## [1] 20814
## [1] "removing: medi_bun_t_toxin"
## [1] 20814
## [1] "removing: medi_bun_t_trach"
## [1] 20814
## [1] "removing: medi_bun_t_tracing"
## [1] 20783
## [1] "removing: medi_bun_t_traction"
## [1] 20710
## [1] "removing: medi_bun_t_training"
## [1] 20699
## [1] "removing: medi_bun_t_transfusion"
## [1] 20699
## [1] "removing: medi_bun_t_treat"
## [1] 20697
## [1] "removing: medi_bun_t_typhoid"
## [1] 20697
## [1] "removing: medi_bun_t_ultrasound"
## [1] 20697
## [1] "removing: medi_bun_t_urinalysis"
## [1] 20697
## [1] "removing: medi_bun_t_urinary"
## [1] 20697
## [1] "removing: medi_bun_t_urine"
## [1] 20697
## [1] "removing: medi_bun_t_uterine"
## [1] 20697
## [1] "removing: medi_bun_t_valve"
## [1] 20697
## [1] "removing: medi_bun_t_vein"
## [1] 20697
## [1] "removing: medi_bun_t_virus"
## [1] 20696
## [1] "removing: medi_bun_t_visit"
## [1] 20695
## [1] "removing: medi_bun_t_visual"
## [1] 20674
## [1] "removing: medi_bun_t_vitamin"
## [1] 20627
## [1] "removing: medi_bun_t_wbc"
## [1] 20627
## [1] "removing: medi_bun_t_wheelchair"
## [1] 20627
## [1] "removing: medi_bun_t_wheezing"
## [1] 20627
## [1] "removing: medi_bun_t_whirlpool"
## [1] 20622
## [1] "removing: medi_bun_t_wire"
## [1] 20622
## [1] "removing: medi_bun_t_with"
## [1] 20594
## [1] "removing: medi_bun_t_without"
## [1] 20594
## [1] "removing: medi_bun_t_wkend"
## [1] 20594
## [1] "removing: medi_bun_t_wound"
## [1] 20567
## [1] "removing: medi_bun_t_menb"
## [1] 20567
## [1] "removing: medi_bun_t_hzv"
## [1] 20521
## [1] "removing: medi_bun_t_xgraft"
## [1] 20521
## [1] "removing: medi_bun_t_hepa"
## [1] 20504
## [1] "removing: medi_bun_t_hepb"
## [1] 20499
## [1] "removing: medi_bun_t_ppsv23"
## [1] 20495
## [1] "removing: medi_bun_t_pcv13"
## [1] 20490
## [1] "removing: medi_bun_t_var_vaccine_live_subq"
## [1] 20490
## [1] "removing: medi_bun_t_menacwy"
## [1] 20490
## [1] "removing: radi_bun_t_adrenal"
## [1] 20490
## [1] "removing: radi_bun_t_angiography"
## [1] 20488
## [1] "removing: radi_bun_t_ankle"
## [1] 20469
## [1] "removing: radi_bun_t_aorta"
## [1] 20468
## [1] "removing: radi_bun_t_area"
## [1] 20468
## [1] "removing: radi_bun_t_artery"
## [1] 20468
## [1] "removing: radi_bun_t_bile"
## [1] 20468
## [1] "removing: radi_bun_t_bladder"
## [1] 20468
## [1] "removing: radi_bun_t_blade"
## [1] 20468
## [1] "removing: radi_bun_t_blockage"
## [1] 20468
## [1] "removing: radi_bun_t_body"
## [1] 20466
## [1] "removing: radi_bun_t_brain"
## [1] 20448
## [1] "removing: radi_bun_t_cardiac"
## [1] 20448
## [1] "removing: radi_bun_t_cast"
## [1] 20448
## [1] "removing: radi_bun_t_chest"
## [1] 20372
## [1] "removing: radi_bun_t_complex"
## [1] 20372
## [1] "removing: radi_bun_t_contrast"
## [1] 20351
## [1] "removing: radi_bun_t_cranial"
## [1] 20351
## [1] "removing: radi_bun_t_ct"
## [1] 20302
## [1] "removing: radi_bun_t_ct_scan"
## [1] 20302
## [1] "removing: radi_bun_t_delivery"
## [1] 20300
## [1] "removing: radi_bun_t_diagnostic"
## [1] 20300
## [1] "removing: radi_bun_t_dislocation"
## [1] 20300
## [1] "removing: radi_bun_t_duct"
## [1] 20300
## [1] "removing: radi_bun_t_echo"
## [1] 20261
## [1] "removing: radi_bun_t_elbow"
## [1] 20251
## [1] "removing: radi_bun_t_epidurograpy"
## [1] 20251
## [1] "removing: radi_bun_t_evaluation"
## [1] 20251
## [1] "removing: radi_bun_t_eye"
## [1] 20251
## [1] "removing: radi_bun_t_femur"
## [1] 20246
## [1] "removing: radi_bun_t_fetal"
## [1] 20246
## [1] "removing: radi_bun_t_finger"
## [1] 20233
## [1] "removing: radi_bun_t_fistula"
## [1] 20233
## [1] "removing: radi_bun_t_fluoroscopy"
## [1] 20232
## [1] "removing: radi_bun_t_fmri"
## [1] 20232
## [1] "removing: radi_bun_t_foot"
## [1] 20168
## [1] "removing: radi_bun_t_forearm"
## [1] 20166
## [1] "removing: radi_bun_t_fracture"
## [1] 20166
## [1] "removing: radi_bun_t_gadobutrol"
## [1] 20166
## [1] "removing: radi_bun_t_gastric"
## [1] 20166
## [1] "removing: radi_bun_t_general"
## [1] 20166
## [1] "removing: radi_bun_t_gential"
## [1] 20166
## [1] "removing: radi_bun_t_gestation"
## [1] 20166
## [1] "removing: radi_bun_t_gi_tract"
## [1] 20166
## [1] "removing: radi_bun_t_glands"
## [1] 20166
## [1] "removing: radi_bun_t_guide"
## [1] 20166
## [1] "removing: radi_bun_t_hand"
## [1] 20132
## [1] "removing: radi_bun_t_heart"
## [1] 20132
## [1] "removing: radi_bun_t_heel"
## [1] 20130
## [1] "removing: radi_bun_t_humerus"
## [1] 20130
## [1] "removing: radi_bun_t_hyperthermia"
## [1] 20130
## [1] "removing: radi_bun_t_imag"
## [1] 20129
## [1] "removing: radi_bun_t_image"
## [1] 20129
## [1] "removing: radi_bun_t_imaging"
## [1] 20129
## [1] "removing: radi_bun_t_infant"
## [1] 20129
## [1] "removing: radi_bun_t_interpret"
## [1] 20129
## [1] "removing: radi_bun_t_jaw"
## [1] 20127
## [1] "removing: radi_bun_t_joint"
## [1] 20104
## [1] "removing: radi_bun_t_kidney"
## [1] 20104
## [1] "removing: radi_bun_t_leg"
## [1] 20101
## [1] "removing: radi_bun_t_lesion"
## [1] 20101
## [1] "removing: radi_bun_t_liver"
## [1] 20101
## [1] "removing: radi_bun_t_lower"
## [1] 20100
## [1] "removing: radi_bun_t_lumbar"
## [1] 20073
## [1] "removing: radi_bun_t_lung"
## [1] 20073
## [1] "removing: radi_bun_t_mammogra"
## [1] 20073
## [1] "removing: radi_bun_t_management"
## [1] 20073
## [1] "removing: radi_bun_t_marrow"
## [1] 20073
## [1] "removing: radi_bun_t_mastoids"
## [1] 20073
## [1] "removing: radi_bun_t_mra"
## [1] 20073
## [1] "removing: radi_bun_t_myelography"
## [1] 20073
## [1] "removing: radi_bun_t_nuclear"
## [1] 20072
## [1] "removing: radi_bun_t_oncology"
## [1] 20072
## [1] "removing: radi_bun_t_pancreas"
## [1] 20072
## [1] "removing: radi_bun_t_penis"
## [1] 20072
## [1] "removing: radi_bun_t_pet"
## [1] 20072
## [1] "removing: radi_bun_t_pituitary"
## [1] 20072
## [1] "removing: radi_bun_t_plan"
## [1] 20071
## [1] "removing: radi_bun_t_plasma"
## [1] 20071
## [1] "removing: radi_bun_t_radiation"
## [1] 20071
## [1] "removing: radi_bun_t_radio"
## [1] 20071
## [1] "removing: radi_bun_t_repair"
## [1] 20071
## [1] "removing: radi_bun_t_rib"
## [1] 20069
## [1] "removing: radi_bun_t_scan"
## [1] 20069
## [1] "removing: radi_bun_t_shoulder"
## [1] 20056
## [1] "removing: radi_bun_t_sinuses"
## [1] 20056
## [1] "removing: radi_bun_t_skull"
## [1] 20056
## [1] "removing: radi_bun_t_socket"
## [1] 20056
## [1] "removing: radi_bun_t_speech"
## [1] 20056
## [1] "removing: radi_bun_t_spleen"
## [1] 20056
## [1] "removing: radi_bun_t_tear"
## [1] 20056
## [1] "removing: radi_bun_t_teeth"
## [1] 20056
## [1] "removing: radi_bun_t_therapy"
## [1] 20056
## [1] "removing: radi_bun_t_thigh"
## [1] 20056
## [1] "removing: radi_bun_t_thorac"
## [1] 20045
## [1] "removing: radi_bun_t_thorax"
## [1] 20045
## [1] "removing: radi_bun_t_throat"
## [1] 20045
## [1] "removing: radi_bun_t_thrombosis"
## [1] 20045
## [1] "removing: radi_bun_t_thyroid"
## [1] 20045
## [1] "removing: radi_bun_t_toe"
## [1] 20042
## [1] "removing: radi_bun_t_tract"
## [1] 20042
## [1] "removing: radi_bun_t_treatment"
## [1] 20042
## [1] "removing: radi_bun_t_trunk"
## [1] 20042
## [1] "removing: radi_bun_t_tumor"
## [1] 20042
## [1] "removing: radi_bun_t_upper"
## [1] 20041
## [1] "removing: radi_bun_t_urethra"
## [1] 20041
## [1] "removing: radi_bun_t_urinary"
## [1] 20041
## [1] "removing: radi_bun_t_vein"
## [1] 20041
## [1] "removing: radi_bun_t_ventilation"
## [1] 20041
## [1] "removing: radi_bun_t_veous"
## [1] 20041
## [1] "removing: radi_bun_t_vessel"
## [1] 20041
## [1] "removing: radi_bun_t_wrist"
## [1] 20030
## [1] "removing: radi_bun_t_with_dye"
## [1] 20028
## [1] "removing: radi_bun_t_xray"
## [1] 20028
## [1] "removing: radi_bun_t_xtremity"
## [1] 20028
## [1] "removing: path_bun_t_acet"
## [1] 20028
## [1] "removing: path_bun_t_acid"
## [1] 20028
## [1] "removing: path_bun_t_acute"
## [1] 20028
## [1] "removing: path_bun_t_agent"
## [1] 20028
## [1] "removing: path_bun_t_alkaline"
## [1] 20028
## [1] "removing: path_bun_t_allerg"
## [1] 20028
## [1] "removing: path_bun_t_amikacin"
## [1] 20028
## [1] "removing: path_bun_t_amino"
## [1] 20028
## [1] "removing: path_bun_t_amitripytline"
## [1] 20028
## [1] "removing: path_bun_t_ammonia"
## [1] 20028
## [1] "removing: path_bun_t_amniotic"
## [1] 20028
## [1] "removing: path_bun_t_anabolic"
## [1] 20028
## [1] "removing: path_bun_t_analgesics"
## [1] 20028
## [1] "removing: path_bun_t_analysis"
## [1] 20028
## [1] "removing: path_bun_t_anti"
## [1] 20026
## [1] "removing: path_bun_t_antibod"
## [1] 20026
## [1] "removing: path_bun_t_antidepressant"
## [1] 20026
## [1] "removing: path_bun_t_antiepileptics"
## [1] 20026
## [1] "removing: path_bun_t_antipsychotic"
## [1] 20026
## [1] "removing: path_bun_t_aortic"
## [1] 20026
## [1] "removing: path_bun_t_assay"
## [1] 20023
## [1] "removing: path_bun_t_autopsy"
## [1] 20023
## [1] "removing: path_bun_t_bact"
## [1] 20023
## [1] "removing: path_bun_t_bacteria"
## [1] 20023
## [1] "removing: path_bun_t_barbiturate"
## [1] 20023
## [1] "removing: path_bun_t_benzo"
## [1] 20023
## [1] "removing: path_bun_t_bile"
## [1] 20023
## [1] "removing: path_bun_t_bilirubin"
## [1] 20023
## [1] "removing: path_bun_t_biopsy"
## [1] 20023
## [1] "removing: path_bun_t_bleeding"
## [1] 20023
## [1] "removing: path_bun_t_blood"
## [1] 20023
## [1] "removing: path_bun_t_cadmium"
## [1] 20023
## [1] "removing: path_bun_t_calcium"
## [1] 20023
## [1] "removing: path_bun_t_cannabinoids"
## [1] 20023
## [1] "removing: path_bun_t_carbamazepine"
## [1] 20023
## [1] "removing: path_bun_t_carbon"
## [1] 20023
## [1] "removing: path_bun_t_catecholamine"
## [1] 20023
## [1] "removing: path_bun_t_chlamydia"
## [1] 20023
## [1] "removing: path_bun_t_chloride"
## [1] 20023
## [1] "removing: path_bun_t_chromosome"
## [1] 20023
## [1] "removing: path_bun_t_chromotograph"
## [1] 20023
## [1] "removing: path_bun_t_class"
## [1] 20023
## [1] "removing: path_bun_t_clot"
## [1] 20023
## [1] "removing: path_bun_t_clozapine"
## [1] 20023
## [1] "removing: path_bun_t_coagulation"
## [1] 20023
## [1] "removing: path_bun_t_cocaine"
## [1] 20023
## [1] "removing: path_bun_t_colon"
## [1] 20023
## [1] "removing: path_bun_t_complete"
## [1] 20023
## [1] "removing: path_bun_t_comprehen"
## [1] 20022
## [1] "removing: path_bun_t_count"
## [1] 20022
## [1] "removing: path_bun_t_cpk"
## [1] 20022
## [1] "removing: path_bun_t_creatinine"
## [1] 20022
## [1] "removing: path_bun_t_cryopreservd"
## [1] 20022
## [1] "removing: path_bun_t_culture"
## [1] 20022
## [1] "removing: path_bun_t_cyanide"
## [1] 20022
## [1] "removing: path_bun_t_cyclosporine"
## [1] 20022
## [1] "removing: path_bun_t_cystines"
## [1] 20022
## [1] "removing: path_bun_t_cytopath"
## [1] 20022
## [1] "removing: path_bun_t_cytopathol"
## [1] 20022
## [1] "removing: path_bun_t_dehydroepiandrosterone"
## [1] 20022
## [1] "removing: path_bun_t_desipramine"
## [1] 20022
## [1] "removing: path_bun_t_detect"
## [1] 20022
## [1] "removing: path_bun_t_digoxin"
## [1] 20022
## [1] "removing: path_bun_t_dihydro"
## [1] 20022
## [1] "removing: path_bun_t_dilation"
## [1] 20022
## [1] "removing: path_bun_t_dioxide"
## [1] 20022
## [1] "removing: path_bun_t_dipropylacetic"
## [1] 20022
## [1] "removing: path_bun_t_disease"
## [1] 20022
## [1] "removing: path_bun_t_dna"
## [1] 20022
## [1] "removing: path_bun_t_draw"
## [1] 20022
## [1] "removing: path_bun_t_drug"
## [1] 20022
## [1] "removing: path_bun_t_dysfunction"
## [1] 20022
## [1] "removing: path_bun_t_embryo"
## [1] 20022
## [1] "removing: path_bun_t_encephalitis"
## [1] 20022
## [1] "removing: path_bun_t_endocrine"
## [1] 20022
## [1] "removing: path_bun_t_enzyme"
## [1] 20022
## [1] "removing: path_bun_t_epstein-barr"
## [1] 20022
## [1] "removing: path_bun_t_estrogen"
## [1] 20022
## [1] "removing: path_bun_t_ethanol"
## [1] 20022
## [1] "removing: path_bun_t_evaluation"
## [1] 20022
## [1] "removing: path_bun_t_factor"
## [1] 20022
## [1] "removing: path_bun_t_fecal"
## [1] 20022
## [1] "removing: path_bun_t_fentanyl"
## [1] 20022
## [1] "removing: path_bun_t_ferritin"
## [1] 20022
## [1] "removing: path_bun_t_fetal"
## [1] 20022
## [1] "removing: path_bun_t_fibrinogen"
## [1] 20022
## [1] "removing: path_bun_t_fibronlytic"
## [1] 20022
## [1] "removing: path_bun_t_flouride"
## [1] 20022
## [1] "removing: path_bun_t_fluid"
## [1] 20022
## [1] "removing: path_bun_t_free"
## [1] 20022
## [1] "removing: path_bun_t_function"
## [1] 20022
## [1] "removing: path_bun_t_galacto"
## [1] 20022
## [1] "removing: path_bun_t_gases"
## [1] 20022
## [1] "removing: path_bun_t_gastrin"
## [1] 20022
## [1] "removing: path_bun_t_gene"
## [1] 20022
## [1] "removing: path_bun_t_general"
## [1] 20022
## [1] "removing: path_bun_t_genome"
## [1] 20022
## [1] "removing: path_bun_t_genotpying"
## [1] 20022
## [1] "removing: path_bun_t_giardia"
## [1] 20022
## [1] "removing: path_bun_t_glucagon"
## [1] 20022
## [1] "removing: path_bun_t_glucose"
## [1] 20022
## [1] "removing: path_bun_t_gonorr"
## [1] 20022
## [1] "removing: path_bun_t_growth"
## [1] 20022
## [1] "removing: path_bun_t_gynecologic"
## [1] 20022
## [1] "removing: path_bun_t_haloperidol"
## [1] 20022
## [1] "removing: path_bun_t_health"
## [1] 20022
## [1] "removing: path_bun_t_hearing"
## [1] 20022
## [1] "removing: path_bun_t_heavy"
## [1] 20022
## [1] "removing: path_bun_t_heinz"
## [1] 20022
## [1] "removing: path_bun_t_hematocrit"
## [1] 20022
## [1] "removing: path_bun_t_hemoglobin"
## [1] 20021
## [1] "removing: path_bun_t_hep"
## [1] 20021
## [1] "removing: path_bun_t_hepati"
## [1] 20021
## [1] "removing: path_bun_t_heridatary"
## [1] 20021
## [1] "removing: path_bun_t_heroin"
## [1] 20021
## [1] "removing: path_bun_t_herpes"
## [1] 20021
## [1] "removing: path_bun_t_hiv"
## [1] 20021
## [1] "removing: path_bun_t_hold"
## [1] 20021
## [1] "removing: path_bun_t_hormone"
## [1] 20021
## [1] "removing: path_bun_t_hpa"
## [1] 20021
## [1] "removing: path_bun_t_hsv"
## [1] 20021
## [1] "removing: path_bun_t_imipramine"
## [1] 20021
## [1] "removing: path_bun_t_immuno"
## [1] 20021
## [1] "removing: path_bun_t_immunoassay"
## [1] 20021
## [1] "removing: path_bun_t_immunohisto"
## [1] 20021
## [1] "removing: path_bun_t_influenza"
## [1] 20021
## [1] "removing: path_bun_t_insulin"
## [1] 20021
## [1] "removing: path_bun_t_iodine"
## [1] 20021
## [1] "removing: path_bun_t_iron"
## [1] 20021
## [1] "removing: path_bun_t_lab"
## [1] 20021
## [1] "removing: path_bun_t_lamotrigine"
## [1] 20021
## [1] "removing: path_bun_t_levetiracetam"
## [1] 20021
## [1] "removing: path_bun_t_lidocaine"
## [1] 20021
## [1] "removing: path_bun_t_lipid"
## [1] 20021
## [1] "removing: path_bun_t_lipoprotein"
## [1] 20021
## [1] "removing: path_bun_t_lithium"
## [1] 20021
## [1] "removing: path_bun_t_loss"
## [1] 20021
## [1] "removing: path_bun_t_low"
## [1] 20021
## [1] "removing: path_bun_t_lung"
## [1] 20021
## [1] "removing: path_bun_t_lyme"
## [1] 20021
## [1] "removing: path_bun_t_lympg"
## [1] 20021
## [1] "removing: path_bun_t_magnesium"
## [1] 20021
## [1] "removing: path_bun_t_malaria"
## [1] 20021
## [1] "removing: path_bun_t_mercury"
## [1] 20021
## [1] "removing: path_bun_t_metabolic"
## [1] 20021
## [1] "removing: path_bun_t_metal"
## [1] 20021
## [1] "removing: path_bun_t_microbe"
## [1] 20021
## [1] "removing: path_bun_t_microscop"
## [1] 20021
## [1] "removing: path_bun_t_microscopic"
## [1] 20021
## [1] "removing: path_bun_t_microscopy"
## [1] 20021
## [1] "removing: path_bun_t_mitocondrial"
## [1] 20021
## [1] "removing: path_bun_t_mopath"
## [1] 20021
## [1] "removing: path_bun_t_mumps"
## [1] 20021
## [1] "removing: path_bun_t_mycophenolate"
## [1] 20021
## [1] "removing: path_bun_t_nicotine"
## [1] 20021
## [1] "removing: path_bun_t_nile"
## [1] 20021
## [1] "removing: path_bun_t_non-opioid"
## [1] 20021
## [1] "removing: path_bun_t_nonantibody"
## [1] 20021
## [1] "removing: path_bun_t_nucleic"
## [1] 20021
## [1] "removing: path_bun_t_obstretric"
## [1] 20021
## [1] "removing: path_bun_t_occult"
## [1] 20021
## [1] "removing: path_bun_t_onco"
## [1] 20021
## [1] "removing: path_bun_t_oocyte"
## [1] 20021
## [1] "removing: path_bun_t_opioid"
## [1] 20021
## [1] "removing: path_bun_t_ovulation"
## [1] 20021
## [1] "removing: path_bun_t_oxycodone"
## [1] 20021
## [1] "removing: path_bun_t_panel"
## [1] 20021
## [1] "removing: path_bun_t_paper"
## [1] 20021
## [1] "removing: path_bun_t_patho"
## [1] 20021
## [1] "removing: path_bun_t_pathologist"
## [1] 20021
## [1] "removing: path_bun_t_period"
## [1] 20021
## [1] "removing: path_bun_t_phenobarbital"
## [1] 20021
## [1] "removing: path_bun_t_phenytoin"
## [1] 20021
## [1] "removing: path_bun_t_phosphatase"
## [1] 20021
## [1] "removing: path_bun_t_phosphorus"
## [1] 20021
## [1] "removing: path_bun_t_pituitary"
## [1] 20021
## [1] "removing: path_bun_t_plasminogen"
## [1] 20021
## [1] "removing: path_bun_t_poliovirus"
## [1] 20021
## [1] "removing: path_bun_t_potassium"
## [1] 20021
## [1] "removing: path_bun_t_pregabalin"
## [1] 20021
## [1] "removing: path_bun_t_pregnancy"
## [1] 20021
## [1] "removing: path_bun_t_primidone"
## [1] 20021
## [1] "removing: path_bun_t_procainamide"
## [1] 20021
## [1] "removing: path_bun_t_procedure"
## [1] 20021
## [1] "removing: path_bun_t_progesterone"
## [1] 20021
## [1] "removing: path_bun_t_prophobulinogen"
## [1] 20021
## [1] "removing: path_bun_t_prophyrins"
## [1] 20021
## [1] "removing: path_bun_t_propoxyphene"
## [1] 20021
## [1] "removing: path_bun_t_prostate"
## [1] 20021
## [1] "removing: path_bun_t_protein"
## [1] 20021
## [1] "removing: path_bun_t_psa"
## [1] 20021
## [1] "removing: path_bun_t_quantitative"
## [1] 20021
## [1] "removing: path_bun_t_quinide"
## [1] 20021
## [1] "removing: path_bun_t_quinine"
## [1] 20021
## [1] "removing: path_bun_t_reagent"
## [1] 20021
## [1] "removing: path_bun_t_renal"
## [1] 20021
## [1] "removing: path_bun_t_renin"
## [1] 20021
## [1] "removing: path_bun_t_retinal"
## [1] 20021
## [1] "removing: path_bun_t_rickettsia"
## [1] 20021
## [1] "removing: path_bun_t_rotovirus"
## [1] 20021
## [1] "removing: path_bun_t_rubella"
## [1] 20021
## [1] "removing: path_bun_t_salicylate"
## [1] 20021
## [1] "removing: path_bun_t_salmonella"
## [1] 20021
## [1] "removing: path_bun_t_scan"
## [1] 20021
## [1] "removing: path_bun_t_screen"
## [1] 20021
## [1] "removing: path_bun_t_sedative"
## [1] 20021
## [1] "removing: path_bun_t_semen"
## [1] 20021
## [1] "removing: path_bun_t_sequence"
## [1] 20021
## [1] "removing: path_bun_t_serotonin"
## [1] 20021
## [1] "removing: path_bun_t_sex"
## [1] 20021
## [1] "removing: path_bun_t_silica"
## [1] 20021
## [1] "removing: path_bun_t_sirolimus"
## [1] 20021
## [1] "removing: path_bun_t_skin"
## [1] 20021
## [1] "removing: path_bun_t_slenium"
## [1] 20021
## [1] "removing: path_bun_t_smear"
## [1] 20021
## [1] "removing: path_bun_t_specimen"
## [1] 20021
## [1] "removing: path_bun_t_sperm"
## [1] 20021
## [1] "removing: path_bun_t_steroid"
## [1] 20021
## [1] "removing: path_bun_t_stimulation"
## [1] 20021
## [1] "removing: path_bun_t_strep"
## [1] 20021
## [1] "removing: path_bun_t_syphilis"
## [1] 20021
## [1] "removing: path_bun_t_syringe"
## [1] 20021
## [1] "removing: path_bun_t_tacrolims"
## [1] 20021
## [1] "removing: path_bun_t_test"
## [1] 20021
## [1] "removing: path_bun_t_testosterone"
## [1] 20021
## [1] "removing: path_bun_t_thawing"
## [1] 20021
## [1] "removing: path_bun_t_theophylline"
## [1] 20021
## [1] "removing: path_bun_t_thyroid"
## [1] 20021
## [1] "removing: path_bun_t_time"
## [1] 20020
## [1] "removing: path_bun_t_tissue"
## [1] 20020
## [1] "removing: path_bun_t_tobramycin"
## [1] 20020
## [1] "removing: path_bun_t_tolerance"
## [1] 20020
## [1] "removing: path_bun_t_total"
## [1] 20020
## [1] "removing: path_bun_t_toxoplasma"
## [1] 20020
## [1] "removing: path_bun_t_tpiramate"
## [1] 20020
## [1] "removing: path_bun_t_transfusion"
## [1] 20020
## [1] "removing: path_bun_t_tumor"
## [1] 20020
## [1] "removing: path_bun_t_typing"
## [1] 20020
## [1] "removing: path_bun_t_urinalysis"
## [1] 20020
## [1] "removing: path_bun_t_urine"
## [1] 20020
## [1] "removing: path_bun_t_vancomycin"
## [1] 20020
## [1] "removing: path_bun_t_vein"
## [1] 20020
## [1] "removing: path_bun_t_venipuncture"
## [1] 20020
## [1] "removing: path_bun_t_virus"
## [1] 20020
## [1] "removing: path_bun_t_vitamin"
## [1] 20020
## [1] "removing: path_bun_t_west"
## [1] 20020
## [1] "removing: path_bun_t_with_scope"
## [1] 20020
## [1] "removing: path_bun_t_without_scope"
## [1] 20020
## [1] "removing: path_bun_t_zonisamide"
## [1] 20020
## [1] "removing: anes_bun_t_abdom"
## [1] 20020
## [1] "removing: anes_bun_t_add - on"
## [1] 20020
## [1] "removing: anes_bun_t_adrenal"
## [1] 20020
## [1] "removing: anes_bun_t_amputation"
## [1] 20020
## [1] "removing: anes_bun_t_analg"
## [1] 20020
## [1] "removing: anes_bun_t_anes"
## [1] 20020
## [1] "removing: anes_bun_t_anesth"
## [1] 20020
## [1] "removing: anes_bun_t_area"
## [1] 20020
## [1] "removing: anes_bun_t_arest"
## [1] 20020
## [1] "removing: anes_bun_t_arteriography"
## [1] 20020
## [1] "removing: anes_bun_t_artery"
## [1] 20020
## [1] "removing: anes_bun_t_biopsy"
## [1] 20020
## [1] "removing: anes_bun_t_bladder"
## [1] 20020
## [1] "removing: anes_bun_t_blood"
## [1] 20020
## [1] "removing: anes_bun_t_bone"
## [1] 20020
## [1] "removing: anes_bun_t_breast"
## [1] 20020
## [1] "removing: anes_bun_t_bronchi"
## [1] 20020
## [1] "removing: anes_bun_t_burn"
## [1] 20020
## [1] "removing: anes_bun_t_casting"
## [1] 20020
## [1] "removing: anes_bun_t_cervix"
## [1] 20020
## [1] "removing: anes_bun_t_chemonucleolysis"
## [1] 20020
## [1] "removing: anes_bun_t_chest"
## [1] 20020
## [1] "removing: anes_bun_t_cleft"
## [1] 20020
## [1] "removing: anes_bun_t_cord"
## [1] 20020
## [1] "removing: anes_bun_t_corneal"
## [1] 20020
## [1] "removing: anes_bun_t_cs"
## [1] 20020
## [1] "removing: anes_bun_t_debride"
## [1] 20020
## [1] "removing: anes_bun_t_deliver"
## [1] 20020
## [1] "removing: anes_bun_t_drainage"
## [1] 20020
## [1] "removing: anes_bun_t_duct"
## [1] 20020
## [1] "removing: anes_bun_t_ear"
## [1] 20020
## [1] "removing: anes_bun_t_elbow"
## [1] 20020
## [1] "removing: anes_bun_t_electroshock"
## [1] 20020
## [1] "removing: anes_bun_t_embolectomy"
## [1] 20020
## [1] "removing: anes_bun_t_endoscopy"
## [1] 20020
## [1] "removing: anes_bun_t_epidural"
## [1] 20020
## [1] "removing: anes_bun_t_esophag"
## [1] 20020
## [1] "removing: anes_bun_t_eyelid"
## [1] 20020
## [1] "removing: anes_bun_t_facial"
## [1] 20020
## [1] "removing: anes_bun_t_fat"
## [1] 20020
## [1] "removing: anes_bun_t_femoral"
## [1] 20020
## [1] "removing: anes_bun_t_fentanyl"
## [1] 20020
## [1] "removing: anes_bun_t_genitalia"
## [1] 20020
## [1] "removing: anes_bun_t_glands"
## [1] 20020
## [1] "removing: anes_bun_t_head"
## [1] 20020
## [1] "removing: anes_bun_t_hernia"
## [1] 20020
## [1] "removing: anes_bun_t_humer"
## [1] 20020
## [1] "removing: anes_bun_t_hydromorphone"
## [1] 20020
## [1] "removing: anes_bun_t_hysterectomy"
## [1] 20020
## [1] "removing: anes_bun_t_image"
## [1] 20020
## [1] "removing: anes_bun_t_insertion"
## [1] 20020
## [1] "removing: anes_bun_t_intracranial"
## [1] 20020
## [1] "removing: anes_bun_t_iredectomy"
## [1] 20020
## [1] "removing: anes_bun_t_joint"
## [1] 20020
## [1] "removing: anes_bun_t_ketorolac"
## [1] 20020
## [1] "removing: anes_bun_t_kidney"
## [1] 20020
## [1] "removing: anes_bun_t_knee"
## [1] 20020
## [1] "removing: anes_bun_t_larynx"
## [1] 20020
## [1] "removing: anes_bun_t_layer"
## [1] 20020
## [1] "removing: anes_bun_t_leg"
## [1] 20020
## [1] "removing: anes_bun_t_lip"
## [1] 20020
## [1] "removing: anes_bun_t_liver"
## [1] 20020
## [1] "removing: anes_bun_t_local"
## [1] 20020
## [1] "removing: anes_bun_t_lower"
## [1] 20020
## [1] "removing: anes_bun_t_lumbar"
## [1] 20020
## [1] "removing: anes_bun_t_lung"
## [1] 20020
## [1] "removing: anes_bun_t_major"
## [1] 20020
## [1] "removing: anes_bun_t_manipulation"
## [1] 20020
## [1] "removing: anes_bun_t_midazolam"
## [1] 20020
## [1] "removing: anes_bun_t_mod_sed"
## [1] 20020
## [1] "removing: anes_bun_t_neck"
## [1] 20020
## [1] "removing: anes_bun_t_nerve"
## [1] 20020
## [1] "removing: anes_bun_t_nose"
## [1] 20020
## [1] "removing: anes_bun_t_open"
## [1] 20020
## [1] "removing: anes_bun_t_organ"
## [1] 20020
## [1] "removing: anes_bun_t_pacemaker"
## [1] 20020
## [1] "removing: anes_bun_t_palate"
## [1] 20020
## [1] "removing: anes_bun_t_pelvic"
## [1] 20020
## [1] "removing: anes_bun_t_pelvis"
## [1] 20020
## [1] "removing: anes_bun_t_penis"
## [1] 20020
## [1] "removing: anes_bun_t_percutaneous"
## [1] 20020
## [1] "removing: anes_bun_t_plastic"
## [1] 20020
## [1] "removing: anes_bun_t_propofol"
## [1] 20020
## [1] "removing: anes_bun_t_prostate"
## [1] 20020
## [1] "removing: anes_bun_t_pump"
## [1] 20020
## [1] "removing: anes_bun_t_puncture"
## [1] 20020
## [1] "removing: anes_bun_t_radical"
## [1] 20020
## [1] "removing: anes_bun_t_release"
## [1] 20020
## [1] "removing: anes_bun_t_removal"
## [1] 20020
## [1] "removing: anes_bun_t_repair"
## [1] 20020
## [1] "removing: anes_bun_t_replace"
## [1] 20020
## [1] "removing: anes_bun_t_rib"
## [1] 20020
## [1] "removing: anes_bun_t_sedation"
## [1] 20020
## [1] "removing: anes_bun_t_shoulder"
## [1] 20020
## [1] "removing: anes_bun_t_sinus"
## [1] 20020
## [1] "removing: anes_bun_t_skull"
## [1] 20020
## [1] "removing: anes_bun_t_sperm"
## [1] 20020
## [1] "removing: anes_bun_t_spine"
## [1] 20020
## [1] "removing: anes_bun_t_spit"
## [1] 20020
## [1] "removing: anes_bun_t_sternal"
## [1] 20020
## [1] "removing: anes_bun_t_stone"
## [1] 20020
## [1] "removing: anes_bun_t_surg"
## [1] 20020
## [1] "removing: anes_bun_t_tendon"
## [1] 20020
## [1] "removing: anes_bun_t_testis"
## [1] 20020
## [1] "removing: anes_bun_t_thigh"
## [1] 20020
## [1] "removing: anes_bun_t_thyriod"
## [1] 20020
## [1] "removing: anes_bun_t_trachea"
## [1] 20020
## [1] "removing: anes_bun_t_transplant"
## [1] 20020
## [1] "removing: anes_bun_t_tromethamine"
## [1] 20020
## [1] "removing: anes_bun_t_tubal"
## [1] 20020
## [1] "removing: anes_bun_t_tympanotomy"
## [1] 20020
## [1] "removing: anes_bun_t_upper"
## [1] 20020
## [1] "removing: anes_bun_t_ureter"
## [1] 20020
## [1] "removing: anes_bun_t_urethra"
## [1] 20020
## [1] "removing: anes_bun_t_vag"
## [1] 20020
## [1] "removing: anes_bun_t_vein"
## [1] 20020
## [1] "removing: anes_bun_t_ventilation"
## [1] 20020
## [1] "removing: anes_bun_t_vesectomy"
## [1] 20020
## [1] "removing: anes_bun_t_vessel"
## [1] 20020
## [1] "removing: anes_bun_t_viteroretinal"
## [1] 20020
## [1] "removing: anes_bun_t_wall"
## [1] 20020
## [1] "removing: anes_bun_t_wrist"
## [1] 20020
## [1] "removing: faci_bun_t_advanced"
## [1] 20020
## [1] "removing: faci_bun_t_analysis"
## [1] 20020
## [1] "removing: faci_bun_t_annual"
## [1] 20020
## [1] "removing: faci_bun_t_assessmnt"
## [1] 20020
## [1] "removing: faci_bun_t_audit"
## [1] 20020
## [1] "removing: faci_bun_t_basic"
## [1] 20020
## [1] "removing: faci_bun_t_behav"
## [1] 20019
## [1] "removing: faci_bun_t_bus"
## [1] 20019
## [1] "removing: faci_bun_t_care"
## [1] 20015
## [1] "removing: faci_bun_t_chng"
## [1] 20015
## [1] "removing: faci_bun_t_computer"
## [1] 20015
## [1] "removing: faci_bun_t_conf"
## [1] 20015
## [1] "removing: faci_bun_t_consultation"
## [1] 20012
## [1] "removing: faci_bun_t_counseling"
## [1] 20011
## [1] "removing: faci_bun_t_critical"
## [1] 20011
## [1] "removing: faci_bun_t_data"
## [1] 20011
## [1] "removing: faci_bun_t_dept"
## [1] 20011
## [1] "removing: faci_bun_t_direct"
## [1] 20011
## [1] "removing: faci_bun_t_disability"
## [1] 20011
## [1] "removing: faci_bun_t_discharge"
## [1] 20011
## [1] "removing: faci_bun_t_dommicl"
## [1] 20011
## [1] "removing: faci_bun_t_emergency"
## [1] 20011
## [1] "removing: faci_bun_t_exam"
## [1] 20011
## [1] "removing: faci_bun_t_fac"
## [1] 20011
## [1] "removing: faci_bun_t_facility"
## [1] 20011
## [1] "removing: faci_bun_t_follow-up"
## [1] 20010
## [1] "removing: faci_bun_t_handling"
## [1] 20009
## [1] "removing: faci_bun_t_home"
## [1] 20009
## [1] "removing: faci_bun_t_hospice"
## [1] 20009
## [1] "removing: faci_bun_t_hospital"
## [1] 20009
## [1] "removing: faci_bun_t_initial"
## [1] 20009
## [1] "removing: faci_bun_t_inpatient"
## [1] 20009
## [1] "removing: faci_bun_t_interfacility"
## [1] 20009
## [1] "removing: faci_bun_t_interpof"
## [1] 20009
## [1] "removing: faci_bun_t_lab"
## [1] 20009
## [1] "removing: faci_bun_t_life"
## [1] 20009
## [1] "removing: faci_bun_t_nonemergency"
## [1] 20009
## [1] "removing: faci_bun_t_noner"
## [1] 20009
## [1] "removing: faci_bun_t_nursing"
## [1] 20009
## [1] "removing: faci_bun_t_observation"
## [1] 20009
## [1] "removing: faci_bun_t_on_call"
## [1] 20009
## [1] "removing: faci_bun_t_online"
## [1] 20009
## [1] "removing: faci_bun_t_phlebotomy"
## [1] 20009
## [1] "removing: faci_bun_t_phone"
## [1] 20009
## [1] "removing: faci_bun_t_physician"
## [1] 20009
## [1] "removing: faci_bun_t_postop"
## [1] 20009
## [1] "removing: faci_bun_t_preventine"
## [1] 20009
## [1] "removing: faci_bun_t_prolong"
## [1] 20006
## [1] "removing: faci_bun_t_service"
## [1] 20006
## [1] "removing: faci_bun_t_smoking"
## [1] 20006
## [1] "removing: faci_bun_t_specimen"
## [1] 20006
## [1] "removing: faci_bun_t_standby"
## [1] 20006
## [1] "removing: faci_bun_t_subsequent"
## [1] 20006
## [1] "removing: faci_bun_t_support"
## [1] 20006
## [1] "removing: faci_bun_t_taxi"
## [1] 20006
## [1] "removing: faci_bun_t_team"
## [1] 20006
## [1] "removing: faci_bun_t_transort"
## [1] 20006
## [1] "removing: faci_bun_t_travel"
## [1] 20006
## [1] "removing: faci_bun_t_van"
## [1] 20006mammo_clean %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_clean %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 37 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.262
## 2 faci_bun_t_visit 0.255
## 3 radi_bun_t_exam 0.238
## 4 faci_bun_t_est 0.208
## 5 radi_bun_t_bone 0.208
## 6 radi_bun_t_pelvi 0.207
## 7 faci_bun_t_office 0.198
## 8 faci_bun_t_pat 0.198
## 9 radi_bun_t_neck 0.105
## 10 medi_bun_t_eye_exam 0.104
## # ... with 27 more rowsmammo_clean %>% get_tag_density_information("radi_bun_t_exam") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ radi_bun_t_exam"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 36## $dist_plots
##
## $stat_tables
mammo_clean <- mammo_clean[radi_bun_t_exam==F]mammo_clean %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_clean %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 34 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.276
## 2 faci_bun_t_visit 0.272
## 3 faci_bun_t_est 0.227
## 4 radi_bun_t_bone 0.225
## 5 faci_bun_t_office 0.206
## 6 faci_bun_t_pat 0.206
## 7 medi_bun_t_eye_exam 0.114
## 8 medi_bun_t_therapeutic 0.0996
## 9 medi_bun_t_exercise 0.0964
## 10 radi_bun_t_mri 0.0875
## # ... with 24 more rowsmammo_clean <- mammo_clean[,radi_bun_t_tomo := fifelse(radi_bun_descr %>% stri_detect_regex("tomo"),T,F)]mammo_clean %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_clean %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 35 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.276
## 2 faci_bun_t_visit 0.272
## 3 radi_bun_t_tomo 0.267
## 4 faci_bun_t_est 0.227
## 5 radi_bun_t_bone 0.225
## 6 faci_bun_t_office 0.206
## 7 faci_bun_t_pat 0.206
## 8 medi_bun_t_eye_exam 0.114
## 9 medi_bun_t_therapeutic 0.0996
## 10 medi_bun_t_exercise 0.0964
## # ... with 25 more rowsmammo_clean %>% get_tag_density_information("radi_bun_t_bone") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ radi_bun_t_bone"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 30.9## $dist_plots
##
## $stat_tables
mammo_clean <- mammo_clean[radi_bun_t_bone == F]mammo_clean %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_clean %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 34 x 2
## name correlation
## <chr> <dbl>
## 1 faci_bun_t_visit 0.319
## 2 radi_bun_t_breast 0.303
## 3 radi_bun_t_tomo 0.293
## 4 faci_bun_t_est 0.267
## 5 faci_bun_t_office 0.241
## 6 faci_bun_t_pat 0.241
## 7 medi_bun_t_eye_exam 0.134
## 8 medi_bun_t_therapeutic 0.116
## 9 medi_bun_t_exercise 0.112
## 10 radi_bun_t_mri 0.0998
## # ... with 24 more rowsmammo_clean %>% get_tag_density_information("faci_bun_t_visit") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ faci_bun_t_visit"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 20.7## $dist_plots
##
## $stat_tables
mammo_w_visit <- mammo_clean[faci_bun_t_visit == T ]
mammo_n_visit <- mammo_clean[faci_bun_t_visit == F ]mammo_n_visit
mammo_n_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_n_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 29 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.300
## 2 radi_bun_t_tomo 0.286
## 3 medi_bun_t_eye_exam 0.163
## 4 medi_bun_t_therapeutic 0.140
## 5 medi_bun_t_exercise 0.136
## 6 radi_bun_t_mri 0.123
## 7 radi_bun_t_without_dye 0.123
## 8 medi_bun_t_manual 0.109
## 9 medi_bun_t_psytx 0.107
## 10 radi_bun_t_arm 0.0882
## # ... with 19 more rowsmammo_n_visit %>% get_tag_density_information("medi_bun_t_eye_exam") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ medi_bun_t_eye_exam"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 24.4## $dist_plots
##
## $stat_tables
mammo_n_visit <- mammo_n_visit[medi_bun_t_eye_exam==F]mammo_n_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_n_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 28 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.297
## 2 radi_bun_t_tomo 0.282
## 3 medi_bun_t_therapeutic 0.146
## 4 medi_bun_t_exercise 0.142
## 5 radi_bun_t_mri 0.127
## 6 radi_bun_t_without_dye 0.127
## 7 medi_bun_t_manual 0.113
## 8 medi_bun_t_psytx 0.112
## 9 radi_bun_t_arm 0.0878
## 10 radi_bun_t_neck 0.0856
## # ... with 18 more rowsmammo_n_visit %>% get_tag_density_information("medi_bun_t_therapeutic") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ medi_bun_t_therapeutic"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 27.9## $dist_plots
##
## $stat_tables
mammo_n_visit <- mammo_n_visit[medi_bun_t_therapeutic==F]mammo_n_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_n_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 27 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.297
## 2 radi_bun_t_tomo 0.281
## 3 radi_bun_t_mri 0.129
## 4 radi_bun_t_without_dye 0.129
## 5 medi_bun_t_psytx 0.119
## 6 radi_bun_t_arm 0.0899
## 7 radi_bun_t_neck 0.0845
## 8 radi_bun_t_spine 0.0845
## 9 medi_bun_t_manual 0.0412
## 10 medi_bun_t_reeducation 0.0348
## # ... with 17 more rowsmammo_n_visit %>% get_tag_density_information("medi_bun_t_psytx") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ medi_bun_t_psytx"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 24.1## $dist_plots
##
## $stat_tables
mammo_n_visit <- mammo_n_visit[medi_bun_t_psytx==F]mammo_n_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_n_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 26 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.295
## 2 radi_bun_t_tomo 0.278
## 3 radi_bun_t_mri 0.132
## 4 radi_bun_t_without_dye 0.132
## 5 radi_bun_t_arm 0.0898
## 6 radi_bun_t_neck 0.0867
## 7 radi_bun_t_spine 0.0867
## 8 medi_bun_t_manual 0.0366
## 9 medi_bun_t_reeducation 0.0328
## 10 duration_mean 0.0271
## # ... with 16 more rowsmammo_n_visit %>% get_tag_density_information("radi_bun_t_mri") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ radi_bun_t_mri"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 56.6## $dist_plots
##
## $stat_tables
mammo_n_visit <- mammo_n_visit[radi_bun_t_mri==F]mammo_n_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_n_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 20 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.297
## 2 radi_bun_t_tomo 0.280
## 3 radi_bun_t_arm 0.0902
## 4 medi_bun_t_manual 0.0374
## 5 medi_bun_t_reeducation 0.0334
## 6 duration_mean 0.0277
## 7 duration_max 0.0254
## 8 medi_bun_t_chiropract 0.022
## 9 medi_bun_t_inject 0.0171
## 10 medi_bun_t_test 0.0148
## 11 medi_bun_t_stimulation 0.0107
## 12 medi_bun_t_immun 0.0105
## 13 medi_bun_t_vacc 0.0103
## 14 medi_bun_t_iiv 0.0099
## 15 medi_bun_t_immunization 0.0099
## 16 medi_bun_t_exercise 0.0087
## 17 medi_bun_t_immunotherapy 0.006
## 18 medi_bun_t_puncture 0.0014
## 19 medi_bun_t_routine 0.0014
## 20 medi_bun_t_venipuncture 0.0014mammo_n_visit %>% get_tag_density_information("radi_bun_t_tomo") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ radi_bun_t_tomo"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 19.5## $dist_plots
##
## $stat_tables
mammo_n_visit_w_tomo <- mammo_n_visit[radi_bun_t_tomo==T]
mammo_n_visit <- mammo_n_visit[radi_bun_t_tomo==F]mammo_n_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_n_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 19 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.267
## 2 radi_bun_t_arm 0.122
## 3 medi_bun_t_test 0.0624
## 4 medi_bun_t_reeducation 0.0423
## 5 duration_mean 0.0408
## 6 duration_max 0.0393
## 7 medi_bun_t_manual 0.0324
## 8 medi_bun_t_chiropract 0.0224
## 9 medi_bun_t_immun 0.0216
## 10 medi_bun_t_immunotherapy 0.018
## 11 medi_bun_t_stimulation 0.0152
## 12 medi_bun_t_iiv 0.0119
## 13 medi_bun_t_immunization 0.0119
## 14 medi_bun_t_vacc 0.0119
## 15 medi_bun_t_inject 0.0106
## 16 medi_bun_t_puncture 0.0082
## 17 medi_bun_t_routine 0.0082
## 18 medi_bun_t_venipuncture 0.0082
## 19 medi_bun_t_exercise 0.0052mammo_n_visit %>% get_tag_density_information("radi_bun_t_breast") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ radi_bun_t_breast"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 36.6## $dist_plots
##
## $stat_tables
mammo_n_visit <- mammo_n_visit[radi_bun_t_breast==F]mammo_n_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_n_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 18 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_arm 0.124
## 2 medi_bun_t_test 0.0668
## 3 medi_bun_t_reeducation 0.0454
## 4 duration_mean 0.0436
## 5 duration_max 0.042
## 6 medi_bun_t_manual 0.0357
## 7 medi_bun_t_chiropract 0.0261
## 8 medi_bun_t_immun 0.0258
## 9 medi_bun_t_immunotherapy 0.0238
## 10 medi_bun_t_stimulation 0.0178
## 11 medi_bun_t_inject 0.0157
## 12 medi_bun_t_iiv 0.0102
## 13 medi_bun_t_immunization 0.0102
## 14 medi_bun_t_vacc 0.0102
## 15 medi_bun_t_puncture 0.0075
## 16 medi_bun_t_routine 0.0075
## 17 medi_bun_t_venipuncture 0.0075
## 18 medi_bun_t_exercise 0.0061mammo_n_visit %>% get_tag_density_information("radi_bun_t_arm") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ radi_bun_t_arm"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 11.3## $dist_plots
##
## $stat_tables
mammo_n_visit <- mammo_n_visit[radi_bun_t_arm==F]mammo_n_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_n_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 17 x 2
## name correlation
## <chr> <dbl>
## 1 medi_bun_t_test 0.0675
## 2 medi_bun_t_reeducation 0.0458
## 3 duration_mean 0.0441
## 4 duration_max 0.0425
## 5 medi_bun_t_manual 0.0356
## 6 medi_bun_t_immun 0.0276
## 7 medi_bun_t_chiropract 0.0252
## 8 medi_bun_t_immunotherapy 0.0251
## 9 medi_bun_t_stimulation 0.0172
## 10 medi_bun_t_inject 0.016
## 11 medi_bun_t_iiv 0.0117
## 12 medi_bun_t_immunization 0.0117
## 13 medi_bun_t_vacc 0.0117
## 14 medi_bun_t_puncture 0.0083
## 15 medi_bun_t_routine 0.0083
## 16 medi_bun_t_venipuncture 0.0083
## 17 medi_bun_t_exercise 0.0059mammo_n_visit <- mammo_n_visit[,`:=`(
surg_sp_name_clean = surg_sp_npi %>% map_chr(get_npi_standard_name),
surg_bp_name_clean = surg_bp_npi %>% map_chr(get_npi_standard_name),
medi_sp_name_clean = medi_sp_npi %>% map_chr(get_npi_standard_name),
medi_bp_name_clean = medi_bp_npi %>% map_chr(get_npi_standard_name),
radi_sp_name_clean = radi_sp_npi %>% map_chr(get_npi_standard_name),
radi_bp_name_clean = radi_bp_npi %>% map_chr(get_npi_standard_name),
path_sp_name_clean = path_sp_npi %>% map_chr(get_npi_standard_name),
path_bp_name_clean = path_bp_npi %>% map_chr(get_npi_standard_name),
anes_sp_name_clean = anes_sp_npi %>% map_chr(get_npi_standard_name),
anes_bp_name_clean = anes_bp_npi %>% map_chr(get_npi_standard_name),
faci_sp_name_clean = faci_sp_npi %>% map_chr(get_npi_standard_name),
faci_bp_name_clean = faci_bp_npi %>% map_chr(get_npi_standard_name)
)]402
mammo_n_visit_btbv5 <- mammo_n_visit %>% btbv5_radi(osa_group_p=NA,
osa_class_p = "Radiology",
osa_specialization_p = "Diagnostic Radiology")## [1] "multiple meet class req"
## [1] "JORDAN ANDREW KIMBALL" "JASON J SMYTHE"
## [1] "multiple meet class req"
## [1] "JORDAN ANDREW KIMBALL" "JASON J SMYTHE"
## [1] "multiple meet class req"
## [1] "CONNIE MITCHELL VAIL" "BEVAN VERN BASTIAN"
## [1] "multiple meet class req"
## [1] "JASON N LANCE" "AARON W STEVENSON"
## [1] "multiple meet class req"
## [1] "TYLER L CRAWFORD" "KIMBALL B TAYLOR"
## [1] "multiple meet class req"
## [1] "RICHARD BLAINE HOLT" "RICHARD NELSON IRION"
## [1] "multiple meet class req"
## [1] "JASON N LANCE" "AARON W STEVENSON"
## [1] "multiple meet class req"
## [1] "JASON N LANCE" "AARON W STEVENSON"
## [1] "multiple meet class req"
## [1] "JORDAN ANDREW KIMBALL" "JASON J SMYTHE"
## [1] "multiple meet class req"
## [1] "JORDAN ANDREW KIMBALL" "JASON J SMYTHE"
## [1] "multiple meet class req"
## [1] "JOHN S COLLINS" "TYLER L CRAWFORD"mammo_n_visit_bq <- mammo_n_visit_btbv5[,`:=`(procedure_type=18, procedure_modifier="Standard")]bq_table_upload(x=procedure_dev_fac_only_table, values= mammo_n_visit_bq, create_disposition='CREATE_IF_NEEDED', write_disposition='WRITE_APPEND')mammo_n_visit_w_tomo
mammo_n_visit_w_tomo %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_n_visit_w_tomo %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 17 x 2
## name correlation
## <chr> <dbl>
## 1 medi_bun_t_manual 0.0384
## 2 medi_bun_t_reeducation 0.03
## 3 medi_bun_t_inject 0.0277
## 4 medi_bun_t_chiropract 0.0253
## 5 medi_bun_t_stimulation 0.0247
## 6 duration_mean 0.0214
## 7 medi_bun_t_immun 0.0203
## 8 duration_max 0.0198
## 9 medi_bun_t_vacc 0.0149
## 10 medi_bun_t_immunotherapy 0.0149
## 11 medi_bun_t_iiv 0.014
## 12 medi_bun_t_immunization 0.014
## 13 medi_bun_t_exercise 0.00930
## 14 medi_bun_t_test 0.0075
## 15 medi_bun_t_puncture 0.0031
## 16 medi_bun_t_routine 0.0031
## 17 medi_bun_t_venipuncture 0.0031mammo_n_visit_w_tomo <- mammo_n_visit_w_tomo[,`:=`(
surg_sp_name_clean = surg_sp_npi %>% map_chr(get_npi_standard_name),
surg_bp_name_clean = surg_bp_npi %>% map_chr(get_npi_standard_name),
medi_sp_name_clean = medi_sp_npi %>% map_chr(get_npi_standard_name),
medi_bp_name_clean = medi_bp_npi %>% map_chr(get_npi_standard_name),
radi_sp_name_clean = radi_sp_npi %>% map_chr(get_npi_standard_name),
radi_bp_name_clean = radi_bp_npi %>% map_chr(get_npi_standard_name),
path_sp_name_clean = path_sp_npi %>% map_chr(get_npi_standard_name),
path_bp_name_clean = path_bp_npi %>% map_chr(get_npi_standard_name),
anes_sp_name_clean = anes_sp_npi %>% map_chr(get_npi_standard_name),
anes_bp_name_clean = anes_bp_npi %>% map_chr(get_npi_standard_name),
faci_sp_name_clean = faci_sp_npi %>% map_chr(get_npi_standard_name),
faci_bp_name_clean = faci_bp_npi %>% map_chr(get_npi_standard_name)
)]mammo_n_visit_w_tomo_btbv5 <- mammo_n_visit_w_tomo %>%
btbv5_radi(osa_group_p=NA,
osa_class_p = "Radiology",
osa_specialization_p = "Diagnostic Radiology") %>%
.[,`:=`(procedure_type=18, procedure_modifier="Standard + Tomosynthesis")]## [1] "multiple meet class req"
## [1] "GARY VAUGHAN HALVERSEN" "TYLER L CRAWFORD"
## [1] "multiple meet class req"
## [1] "JONATHAN SCOTT SHAKESPEAR" "JOHN N HENRIE"
## [1] "multiple meet class req"
## [1] "TYLER L CRAWFORD" "SETH CARDALL"
## [1] "multiple meet class req"
## [1] "BARRY M BIRKIN" "JACOB BROWN"
## [1] "multiple meet class req"
## [1] "BRENT T LAYTON" "ADAM STANLEY GREEN"
## [1] "multiple meet class req"
## [1] "C. RICHARD HOPKINS" "MARK D ANDERSON"
## [1] "multiple meet class req"
## [1] "ROY C HAMMOND" "DANIEL LYMAN COREY"
## [1] "multiple meet class req"
## [1] "NICOLE S WINKLER" "MATTHEW B MORGAN"
## [1] "multiple meet class req"
## [1] "STEVEN BRENT LEE" "RICHARD NELSON IRION"
## [1] "multiple meet class req"
## [1] "CHERYL ANN WALCZAK" "MATTHEW B MORGAN"
## [1] "multiple meet class req"
## [1] "MARK S ASAY" "JEFFREY S MCCLELLAN"
## [1] "multiple meet class req"
## [1] "ROY C HAMMOND" "DAVID R COTTAM"
## [1] "multiple meet class req"
## [1] "BARRY M BIRKIN" "DAVID R COTTAM"
## [1] "multiple meet class req"
## [1] "DANIEL N SOMMERS" "RICHARD GREG LEININGER"
## [1] "multiple meet class req"
## [1] "TYLER L CRAWFORD" "KIMBALL B TAYLOR"
## [1] "multiple meet class req"
## [1] "BENJAMIN ROMNEY" "JONATHAN SCOTT SHAKESPEAR"
## [1] "multiple meet class req"
## [1] "JEFFREY S MCCLELLAN" "JACOB BROWN"
## [1] "multiple meet class req"
## [1] "BRETT SHELDON WALKER" "SARHA LEE"
## [1] "multiple meet class req"
## [1] "MARK S ASAY" "KIMBALL B TAYLOR"
## [1] "multiple meet class req"
## [1] "FRED JESTON DAWSON" "JASON HOWARD EVES"
## [1] "multiple meet class req"
## [1] "BLAKE C. MORTENSON" "JEFFREY SCOTT JOB"
## [1] "multiple meet class req"
## [1] "ADAM STANLEY GREEN" "KENT M GLEDHILL"mammo_w_visit
mammo_w_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_w_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 31 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.3
## 2 radi_bun_t_tomo 0.296
## 3 medi_bun_t_therapeutic 0.141
## 4 medi_bun_t_exercise 0.134
## 5 medi_bun_t_eye_exam 0.132
## 6 faci_bun_t_est 0.123
## 7 faci_bun_t_office 0.110
## 8 faci_bun_t_pat 0.110
## 9 medi_bun_t_manual 0.106
## 10 radi_bun_t_arm 0.089
## # ... with 21 more rowsmammo_w_visit %>% get_tag_density_information("medi_bun_t_eye_exam") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ medi_bun_t_eye_exam"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 40.7## $dist_plots
##
## $stat_tables
mammo_w_visit <- mammo_w_visit[medi_bun_t_eye_exam==F]mammo_w_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_w_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 30 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.301
## 2 radi_bun_t_tomo 0.296
## 3 medi_bun_t_therapeutic 0.138
## 4 medi_bun_t_exercise 0.131
## 5 faci_bun_t_est 0.127
## 6 faci_bun_t_office 0.104
## 7 faci_bun_t_pat 0.104
## 8 medi_bun_t_manual 0.101
## 9 radi_bun_t_arm 0.0892
## 10 medi_bun_t_reeducation 0.0808
## # ... with 20 more rowsmammo_w_visit %>% get_tag_density_information("medi_bun_t_therapeutic") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ medi_bun_t_therapeutic"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 39.2## $dist_plots
##
## $stat_tables
mammo_w_visit <- mammo_w_visit[medi_bun_t_therapeutic==F]mammo_w_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_w_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 28 x 2
## name correlation
## <chr> <dbl>
## 1 radi_bun_t_breast 0.310
## 2 radi_bun_t_tomo 0.305
## 3 faci_bun_t_est 0.128
## 4 faci_bun_t_office 0.112
## 5 faci_bun_t_pat 0.112
## 6 radi_bun_t_arm 0.0894
## 7 medi_bun_t_psytx 0.0784
## 8 radi_bun_t_mri 0.0503
## 9 radi_bun_t_neck 0.0503
## 10 radi_bun_t_without_dye 0.0503
## # ... with 18 more rowsmammo_w_visit %>% get_tag_density_information("radi_bun_t_tomo") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ radi_bun_t_tomo"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 22.7## $dist_plots
##
## $stat_tables
mammo_w_visit_w_tomo <- mammo_w_visit[radi_bun_t_tomo==T]
mammo_w_visit <- mammo_w_visit[radi_bun_t_tomo==F]mammo_w_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_w_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 26 x 2
## name correlation
## <chr> <dbl>
## 1 faci_bun_t_office 0.156
## 2 faci_bun_t_pat 0.156
## 3 radi_bun_t_breast 0.150
## 4 radi_bun_t_mri 0.119
## 5 radi_bun_t_neck 0.119
## 6 radi_bun_t_spine 0.119
## 7 radi_bun_t_without_dye 0.119
## 8 radi_bun_t_arm 0.111
## 9 faci_bun_t_est 0.0959
## 10 medi_bun_t_test 0.0367
## # ... with 16 more rowsmammo_w_visit %>% get_tag_density_information("radi_bun_t_breast") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ radi_bun_t_breast"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 71.7## $dist_plots
##
## $stat_tables
mammo_w_visit <- mammo_w_visit[radi_bun_t_breast==F]mammo_w_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_w_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 25 x 2
## name correlation
## <chr> <dbl>
## 1 faci_bun_t_office 0.163
## 2 faci_bun_t_pat 0.163
## 3 radi_bun_t_mri 0.121
## 4 radi_bun_t_neck 0.121
## 5 radi_bun_t_spine 0.121
## 6 radi_bun_t_without_dye 0.121
## 7 radi_bun_t_arm 0.112
## 8 faci_bun_t_est 0.0965
## 9 medi_bun_t_test 0.0375
## 10 medi_bun_t_immunization 0.0368
## # ... with 15 more rowsmammo_w_visit <- mammo_w_visit[radi_bun_t_mri==F]mammo_w_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_w_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 21 x 2
## name correlation
## <chr> <dbl>
## 1 faci_bun_t_office 0.166
## 2 faci_bun_t_pat 0.166
## 3 radi_bun_t_arm 0.112
## 4 faci_bun_t_est 0.0883
## 5 medi_bun_t_test 0.0379
## 6 medi_bun_t_immunization 0.0375
## 7 medi_bun_t_vacc 0.0375
## 8 medi_bun_t_psytx 0.0364
## 9 medi_bun_t_immun 0.0347
## 10 medi_bun_t_iiv 0.0327
## # ... with 11 more rowsmammo_w_visit %>% get_tag_density_information("radi_bun_t_arm") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ radi_bun_t_arm"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 20.9## $dist_plots
##
## $stat_tables
mammo_w_visit <- mammo_w_visit[radi_bun_t_arm==F]mammo_w_visit %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_w_visit %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 20 x 2
## name correlation
## <chr> <dbl>
## 1 faci_bun_t_office 0.164
## 2 faci_bun_t_pat 0.164
## 3 faci_bun_t_est 0.0931
## 4 medi_bun_t_test 0.0377
## 5 medi_bun_t_immunization 0.0359
## 6 medi_bun_t_vacc 0.0359
## 7 medi_bun_t_psytx 0.0352
## 8 medi_bun_t_immun 0.0328
## 9 medi_bun_t_iiv 0.0311
## 10 medi_bun_t_stimulation 0.0291
## 11 medi_bun_t_chiropract 0.0222
## 12 medi_bun_t_puncture 0.0157
## 13 medi_bun_t_routine 0.0157
## 14 medi_bun_t_venipuncture 0.0157
## 15 medi_bun_t_manual 0.0144
## 16 medi_bun_t_reeducation 0.0107
## 17 duration_mean 0.0095
## 18 duration_max 0.0095
## 19 medi_bun_t_immunotherapy 0.0011
## 20 medi_bun_t_inject 0.0011mammo_w_visit %>% get_tag_density_information("faci_bun_t_office") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ faci_bun_t_office"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 26.4## $dist_plots
##
## $stat_tables
mammo_w_visit <- mammo_w_visit[,`:=`(
surg_sp_name_clean = surg_sp_npi %>% map_chr(get_npi_standard_name),
surg_bp_name_clean = surg_bp_npi %>% map_chr(get_npi_standard_name),
medi_sp_name_clean = medi_sp_npi %>% map_chr(get_npi_standard_name),
medi_bp_name_clean = medi_bp_npi %>% map_chr(get_npi_standard_name),
radi_sp_name_clean = radi_sp_npi %>% map_chr(get_npi_standard_name),
radi_bp_name_clean = radi_bp_npi %>% map_chr(get_npi_standard_name),
path_sp_name_clean = path_sp_npi %>% map_chr(get_npi_standard_name),
path_bp_name_clean = path_bp_npi %>% map_chr(get_npi_standard_name),
anes_sp_name_clean = anes_sp_npi %>% map_chr(get_npi_standard_name),
anes_bp_name_clean = anes_bp_npi %>% map_chr(get_npi_standard_name),
faci_sp_name_clean = faci_sp_npi %>% map_chr(get_npi_standard_name),
faci_bp_name_clean = faci_bp_npi %>% map_chr(get_npi_standard_name)
)]mammo_w_visit_btbv5 <- mammo_w_visit %>%
btbv5_radi(osa_group_p=NA,
osa_class_p = "Radiology",
osa_specialization_p = "Diagnostic Radiology") %>%
.[,`:=`(procedure_type=18, procedure_modifier="Standard + Office Visit")]## [1] "multiple meet class req"
## [1] "NICOLE S WINKLER"###mammo_w_visit_w_tomo
mammo_w_visit_w_tomo %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_w_visit_w_tomo %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 21 x 2
## name correlation
## <chr> <dbl>
## 1 faci_bun_t_est 0.136
## 2 faci_bun_t_office 0.125
## 3 faci_bun_t_pat 0.125
## 4 medi_bun_t_psytx 0.0758
## 5 radi_bun_t_spine 0.0449
## 6 radi_bun_t_x-ray 0.0449
## 7 duration_mean 0.0321
## 8 duration_max 0.0321
## 9 medi_bun_t_immun 0.029
## 10 medi_bun_t_test 0.0281
## # ... with 11 more rowsmammo_w_visit_w_tomo %>% get_tag_density_information("faci_bun_t_est") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ faci_bun_t_est"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 30.5## $dist_plots
##
## $stat_tables
mammo_w_visit_w_tomo <- mammo_w_visit_w_tomo[faci_bun_t_est==T]mammo_w_visit_w_tomo %>% plot_med_density() %>% print()## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
mammo_w_visit_w_tomo %>% get_tag_cor() %>% print()## Warning in stats::cor(cor_data): the standard deviation is zero## # A tibble: 18 x 2
## name correlation
## <chr> <dbl>
## 1 faci_bun_t_office 0.114
## 2 faci_bun_t_pat 0.114
## 3 medi_bun_t_psytx 0.0594
## 4 radi_bun_t_spine 0.0487
## 5 radi_bun_t_x-ray 0.0487
## 6 medi_bun_t_immun 0.0389
## 7 medi_bun_t_test 0.0338
## 8 medi_bun_t_iiv 0.0332
## 9 medi_bun_t_immunization 0.0332
## 10 medi_bun_t_vacc 0.0332
## 11 medi_bun_t_puncture 0.0201
## 12 medi_bun_t_routine 0.0201
## 13 medi_bun_t_venipuncture 0.0201
## 14 medi_bun_t_immunotherapy 0.02
## 15 medi_bun_t_inject 0.0189
## 16 medi_bun_t_chiropract 0.0142
## 17 medi_bun_t_manual 0.0088
## 18 medi_bun_t_stimulation 0.0075mammo_w_visit_w_tomo %>% get_tag_density_information("faci_bun_t_office") %>% print()## Scale for 'y' is already present. Adding another scale for 'y', which will
## replace the existing scale.## Scale for 'x' is already present. Adding another scale for 'x', which will
## replace the existing scale.## [1] "tp_med ~ faci_bun_t_office"## Warning in leveneTest.default(y = y, group = group, ...): group coerced to
## factor.## Picking joint bandwidth of 28.6## $dist_plots
##
## $stat_tables
mammo_w_visit_w_tomo <- mammo_w_visit_w_tomo[,`:=`(
surg_sp_name_clean = surg_sp_npi %>% map_chr(get_npi_standard_name),
surg_bp_name_clean = surg_bp_npi %>% map_chr(get_npi_standard_name),
medi_sp_name_clean = medi_sp_npi %>% map_chr(get_npi_standard_name),
medi_bp_name_clean = medi_bp_npi %>% map_chr(get_npi_standard_name),
radi_sp_name_clean = radi_sp_npi %>% map_chr(get_npi_standard_name),
radi_bp_name_clean = radi_bp_npi %>% map_chr(get_npi_standard_name),
path_sp_name_clean = path_sp_npi %>% map_chr(get_npi_standard_name),
path_bp_name_clean = path_bp_npi %>% map_chr(get_npi_standard_name),
anes_sp_name_clean = anes_sp_npi %>% map_chr(get_npi_standard_name),
anes_bp_name_clean = anes_bp_npi %>% map_chr(get_npi_standard_name),
faci_sp_name_clean = faci_sp_npi %>% map_chr(get_npi_standard_name),
faci_bp_name_clean = faci_bp_npi %>% map_chr(get_npi_standard_name)
)]mammo_w_visit_w_tomo_btbv5 <- mammo_w_visit_w_tomo %>%
btbv5_radi(osa_group_p=NA,
osa_class_p = "Radiology",
osa_specialization_p = "Diagnostic Radiology") %>%
.[,`:=`(procedure_type=18, procedure_modifier="Standard + Office Visit + Tomosynthesis")]## [1] "multiple meet class req"
## [1] "K MICHAEL HANDLON"mammo_full_btbv5 <-mammo_n_visit_bq %>%
rbind(mammo_n_visit_w_tomo_btbv5) %>%
rbind(mammo_w_visit_btbv5) %>%
rbind(mammo_w_visit_w_tomo_btbv5)mammo_full_btbv5$tp_med_med %>% summary()## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 10.59 261.97 359.97 368.39 467.89 857.41mammo_full_btbv5$tp_med_med %>% sd()## [1] 148.376ggplot(data=mammo_full_btbv5,
aes(x=tp_med_med))+
geom_boxplot()
mammo_full_btbv5 %>% saveRDS("mammo_full_btbv5.RDS")
mammo_clean %>% saveRDS("mammo_clean.RDS")mammo_full_btbv5 <- mammo_full_btbv5[,ingest_date:=Sys.Date()]bq_table_upload(x=procedure_dev_table, values= mammo_full_btbv5, create_disposition='CREATE_IF_NEEDED', write_disposition='WRITE_APPEND')